Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ICJ61_RS16705 Genome accession   NZ_CP061284
Coordinates   3209891..3210535 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain XH-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204891..3215535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS16670 (ICJ61_16670) - 3206084..3206515 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  ICJ61_RS16675 (ICJ61_16675) - 3206515..3206856 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  ICJ61_RS16680 (ICJ61_16680) - 3206849..3208330 (+) 1482 WP_106019476.1 Na+/H+ antiporter subunit D -
  ICJ61_RS16685 (ICJ61_16685) - 3208336..3208812 (+) 477 WP_101864138.1 Na+/H+ antiporter subunit E -
  ICJ61_RS16690 (ICJ61_16690) - 3208812..3209096 (+) 285 WP_106019477.1 Na(+)/H(+) antiporter subunit F1 -
  ICJ61_RS16695 (ICJ61_16695) mnhG 3209080..3209454 (+) 375 WP_024122678.1 monovalent cation/H(+) antiporter subunit G -
  ICJ61_RS16700 (ICJ61_16700) - 3209493..3209873 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  ICJ61_RS16705 (ICJ61_16705) comA 3209891..3210535 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  ICJ61_RS16710 (ICJ61_16710) comP 3210616..3212922 (-) 2307 WP_188323256.1 histidine kinase Regulator
  ICJ61_RS16715 (ICJ61_16715) comX 3212938..3213159 (-) 222 WP_059292642.1 competence pheromone ComX -
  ICJ61_RS16720 (ICJ61_16720) - 3213156..3214025 (-) 870 WP_101864136.1 polyprenyl synthetase family protein -
  ICJ61_RS16725 (ICJ61_16725) degQ 3214210..3214350 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  ICJ61_RS16730 (ICJ61_16730) - 3214811..3215179 (+) 369 WP_106019478.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=481548 ICJ61_RS16705 WP_024122680.1 3209891..3210535(-) (comA) [Bacillus halotolerans strain XH-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=481548 ICJ61_RS16705 WP_024122680.1 3209891..3210535(-) (comA) [Bacillus halotolerans strain XH-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCGGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986