Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ICJ61_RS14760 Genome accession   NZ_CP061284
Coordinates   2823225..2823971 (-) Length   248 a.a.
NCBI ID   WP_106020201.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2818225..2828971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS14735 (ICJ61_14735) mreC 2818634..2819506 (-) 873 WP_188323188.1 rod shape-determining protein MreC -
  ICJ61_RS14740 (ICJ61_14740) mreB 2819536..2820549 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  ICJ61_RS14745 (ICJ61_14745) radC 2820641..2821336 (-) 696 WP_024122357.1 DNA repair protein RadC -
  ICJ61_RS14750 (ICJ61_14750) - 2821374..2821943 (-) 570 WP_024122358.1 Maf family nucleotide pyrophosphatase -
  ICJ61_RS14755 (ICJ61_14755) - 2822094..2823092 (-) 999 WP_106020200.1 SPOR domain-containing protein -
  ICJ61_RS14760 (ICJ61_14760) comC 2823225..2823971 (-) 747 WP_106020201.1 A24 family peptidase Machinery gene
  ICJ61_RS14765 (ICJ61_14765) - 2824112..2825404 (-) 1293 WP_106020202.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ICJ61_RS14770 (ICJ61_14770) valS 2825464..2828106 (-) 2643 WP_188323818.1 valine--tRNA ligase -
  ICJ61_RS14775 (ICJ61_14775) - 2828555..2828746 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26517.14 Da        Isoelectric Point: 9.7803

>NTDB_id=481543 ICJ61_RS14760 WP_106020201.1 2823225..2823971(-) (comC) [Bacillus halotolerans strain XH-1]
MIPILFVLGLILGSFYYTAGCRIPLHMSIINPRSACSFCRRTLTPAELIPVLSFALLKGKCKSCGQKLSLMYPAAELSTA
CLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDVKLFAVIGLVLGVKMLAAAFFFSVFIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=481543 ICJ61_RS14760 WP_106020201.1 2823225..2823971(-) (comC) [Bacillus halotolerans strain XH-1]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTACACGGCAGGATGCCGTATCCCCTTACACAT
GTCCATCATAAACCCTCGTTCGGCATGTTCTTTTTGCCGGAGAACCTTAACTCCGGCAGAATTAATCCCTGTTTTATCTT
TTGCTCTGCTAAAAGGCAAATGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTATCCAGCGGCAGAGCTCTCGACAGCG
TGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
CATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATGTTAAATTATTTGCCGTTATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCAGTTTTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

81.048

100

0.81