Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ICJ61_RS13455 Genome accession   NZ_CP061284
Coordinates   2596611..2597036 (-) Length   141 a.a.
NCBI ID   WP_127696748.1    Uniprot ID   A0A9Q4EJ26
Organism   Bacillus halotolerans strain XH-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2591611..2602036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS22130 - 2591850..2591984 (-) 135 WP_010335019.1 hypothetical protein -
  ICJ61_RS13430 (ICJ61_13430) - 2592062..2592793 (-) 732 WP_105953571.1 SGNH/GDSL hydrolase family protein -
  ICJ61_RS13435 (ICJ61_13435) - 2593040..2593792 (-) 753 WP_127696751.1 N-acetylmuramoyl-L-alanine amidase -
  ICJ61_RS13440 (ICJ61_13440) - 2593987..2594613 (+) 627 WP_024122122.1 TVP38/TMEM64 family protein -
  ICJ61_RS13445 (ICJ61_13445) gnd 2594635..2595528 (-) 894 WP_127696750.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  ICJ61_RS13450 (ICJ61_13450) - 2595849..2596577 (+) 729 WP_127696749.1 DUF308 domain-containing protein -
  ICJ61_RS13455 (ICJ61_13455) nucA/comI 2596611..2597036 (-) 426 WP_127696748.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ICJ61_RS13460 (ICJ61_13460) - 2597213..2597563 (+) 351 Protein_2646 sigma-70 family RNA polymerase sigma factor -
  ICJ61_RS13465 (ICJ61_13465) spoIVCA 2597591..2599051 (-) 1461 WP_223203936.1 site-specific DNA recombinase SpoIVCA -
  ICJ61_RS21985 - 2599009..2599187 (-) 179 Protein_2648 hypothetical protein -
  ICJ61_RS13470 (ICJ61_13470) - 2599844..2600437 (-) 594 WP_080528950.1 TetR/AcrR family transcriptional regulator -
  ICJ61_RS13475 (ICJ61_13475) - 2600596..2601591 (+) 996 WP_088299191.1 acryloyl-CoA reductase -
  ICJ61_RS13480 (ICJ61_13480) - 2601831..2602000 (+) 170 Protein_2651 DUF255 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15528.68 Da        Isoelectric Point: 5.2215

>NTDB_id=481539 ICJ61_RS13455 WP_127696748.1 2596611..2597036(-) (nucA/comI) [Bacillus halotolerans strain XH-1]
MKRWMAMLLLAAAVFLCLLGKDMTAPQQAKGAALYDKILYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=481539 ICJ61_RS13455 WP_127696748.1 2596611..2597036(-) (nucA/comI) [Bacillus halotolerans strain XH-1]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAGCAGTTTTTCTTTGTTTGTTGGGAAAGGATATGACGGCTCCGCA
ACAGGCCAAGGGGGCTGCTTTATATGACAAAATTTTATACTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCAACGAAGCCTGGCTACGATCGGGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGTGCCGGAGCCGA
TGTACGATATGTAACGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTCGGAAATCAAATGAGCAGTTATCCAGATGGTA
CCAAAGTATTGTTTATTGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.29

87.943

0.539