Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ICJ61_RS13205 Genome accession   NZ_CP061284
Coordinates   2553042..2553809 (-) Length   255 a.a.
NCBI ID   WP_106020116.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2548042..2558809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS13185 (ICJ61_13185) - 2548216..2549028 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  ICJ61_RS13190 (ICJ61_13190) ccpN 2549054..2549692 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  ICJ61_RS13195 (ICJ61_13195) glyS 2549826..2551865 (-) 2040 WP_188323137.1 glycine--tRNA ligase subunit beta -
  ICJ61_RS13200 (ICJ61_13200) glyQ 2551858..2552745 (-) 888 WP_188323138.1 glycine--tRNA ligase subunit alpha -
  ICJ61_RS13205 (ICJ61_13205) recO 2553042..2553809 (-) 768 WP_106020116.1 DNA repair protein RecO Machinery gene
  ICJ61_RS13210 (ICJ61_13210) - 2553846..2553989 (-) 144 WP_024122087.1 YqzL family protein -
  ICJ61_RS13215 (ICJ61_13215) era 2554133..2555038 (-) 906 WP_010334979.1 GTPase Era -
  ICJ61_RS13220 (ICJ61_13220) cdd 2555019..2555429 (-) 411 WP_188323139.1 cytidine deaminase -
  ICJ61_RS13225 (ICJ61_13225) - 2555543..2555920 (-) 378 WP_101864544.1 diacylglycerol kinase family protein -
  ICJ61_RS13230 (ICJ61_13230) ybeY 2555901..2556374 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  ICJ61_RS13235 (ICJ61_13235) pgpH 2556375..2558510 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.04 Da        Isoelectric Point: 8.3145

>NTDB_id=481535 ICJ61_RS13205 WP_106020116.1 2553042..2553809(-) (recO) [Bacillus halotolerans strain XH-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSHDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=481535 ICJ61_RS13205 WP_106020116.1 2553042..2553809(-) (recO) [Bacillus halotolerans strain XH-1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCATGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
GCCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941