Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   ICJ61_RS12925 Genome accession   NZ_CP061284
Coordinates   2502652..2503689 (-) Length   345 a.a.
NCBI ID   WP_151175144.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2497652..2508689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS12875 (ICJ61_12875) tasA 2497754..2498539 (-) 786 WP_106020091.1 biofilm matrix protein TasA -
  ICJ61_RS12880 (ICJ61_12880) sipW 2498604..2499188 (-) 585 WP_105955579.1 signal peptidase I SipW -
  ICJ61_RS12885 (ICJ61_12885) tapA 2499160..2499921 (-) 762 WP_106020093.1 amyloid fiber anchoring/assembly protein TapA -
  ICJ61_RS12890 (ICJ61_12890) - 2500189..2500512 (+) 324 WP_101864527.1 YqzG/YhdC family protein -
  ICJ61_RS12895 (ICJ61_12895) - 2500555..2500734 (-) 180 WP_003236949.1 YqzE family protein -
  ICJ61_RS12900 (ICJ61_12900) comGG 2500806..2501180 (-) 375 WP_188323133.1 competence type IV pilus minor pilin ComGG Machinery gene
  ICJ61_RS12905 (ICJ61_12905) comGF 2501181..2501600 (-) 420 WP_316961080.1 competence type IV pilus minor pilin ComGF Machinery gene
  ICJ61_RS12910 (ICJ61_12910) comGE 2501590..2501937 (-) 348 WP_151175142.1 competence type IV pilus minor pilin ComGE Machinery gene
  ICJ61_RS12915 (ICJ61_12915) comGD 2501921..2502352 (-) 432 WP_151175143.1 competence type IV pilus minor pilin ComGD Machinery gene
  ICJ61_RS12920 (ICJ61_12920) comGC 2502342..2502638 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  ICJ61_RS12925 (ICJ61_12925) comGB 2502652..2503689 (-) 1038 WP_151175144.1 competence type IV pilus assembly protein ComGB Machinery gene
  ICJ61_RS12930 (ICJ61_12930) comGA 2503676..2504746 (-) 1071 WP_095713275.1 competence protein ComGA Machinery gene
  ICJ61_RS12935 (ICJ61_12935) - 2505067..2505477 (-) 411 WP_106020097.1 CBS domain-containing protein -
  ICJ61_RS12940 (ICJ61_12940) - 2505540..2506493 (-) 954 WP_095713277.1 magnesium transporter CorA family protein -
  ICJ61_RS12945 (ICJ61_12945) - 2506637..2507966 (+) 1330 Protein_2543 hemolysin family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 40000.20 Da        Isoelectric Point: 9.6630

>NTDB_id=481533 ICJ61_RS12925 WP_151175144.1 2502652..2503689(-) (comGB) [Bacillus halotolerans strain XH-1]
MKQIRKVWPLKDQAYLLKRLGEMTAGGYSLLDGLRLMQLQMNKRQLADLANAISRLREGESFYHVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKASQAEQIKRVLRYPFFLIFTVGVMLYMLQYIIIPQFSGIYQSMNVETSRTTDIIFAFF
QHLDAVFILMAILAAGIGLYYWFVFKKKSPDHQMLICVSIPLFGKLVRLFNSYFFSLQLSSLLASGLSIYESLKAFRKQS
FLPFYRHEAEQMIERLKAGETIEAALCKRPFYENDFSKVLSHGQLSGRLDRELFTYSQFILQRLEDKSQKWTGILQPIIY
GFVAGMILIVYLSMLLPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=481533 ICJ61_RS12925 WP_151175144.1 2502652..2503689(-) (comGB) [Bacillus halotolerans strain XH-1]
ATGAAACAGATTAGAAAAGTTTGGCCGTTAAAGGATCAAGCCTATTTACTGAAAAGGCTGGGTGAAATGACAGCGGGCGG
ATACAGTCTTTTAGACGGATTGCGCCTGATGCAGCTGCAAATGAATAAAAGGCAGCTGGCGGACTTGGCTAACGCAATAA
GCCGGTTGAGAGAAGGGGAATCGTTTTACCATGTATTAAAGAGCTTGTCATTTCATAAGGAAGCCGTCGGTATTTGTTAT
TTTGCTGAAACACATGGGGAATTGCCGGCTTCCATGATTCAGAGCGGAGAGCTGCTGGAACGAAAAGCAAGCCAAGCAGA
ACAGATAAAAAGGGTGTTGCGATATCCTTTTTTCCTCATCTTTACCGTTGGTGTCATGCTTTATATGCTGCAATACATCA
TCATCCCTCAGTTTTCCGGTATTTATCAATCGATGAATGTAGAAACGTCACGCACAACAGACATCATTTTTGCATTTTTT
CAGCACCTTGATGCTGTGTTCATATTAATGGCCATTTTGGCTGCAGGAATAGGTCTTTATTATTGGTTTGTGTTCAAGAA
AAAATCCCCTGACCATCAAATGCTCATTTGCGTAAGCATTCCTTTGTTTGGAAAGCTGGTCAGGCTGTTTAACAGCTACT
TTTTTTCTTTACAGCTGAGCAGTCTGCTTGCATCAGGTCTTTCTATTTATGAAAGTTTGAAAGCATTTAGGAAGCAATCG
TTTCTCCCTTTTTACCGCCATGAAGCTGAACAAATGATTGAACGGTTAAAAGCCGGTGAAACCATTGAAGCTGCTTTATG
CAAACGGCCTTTTTACGAAAATGATTTTTCAAAAGTGTTATCTCATGGCCAGCTAAGCGGCCGCTTGGATCGGGAACTCT
TCACATACAGCCAGTTTATATTGCAGCGGCTTGAGGACAAGTCACAAAAATGGACAGGCATTCTTCAGCCCATTATTTAC
GGATTTGTCGCAGGGATGATTTTAATTGTTTATCTATCGATGCTCCTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

80.495

93.623

0.754