Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ICJ61_RS11690 Genome accession   NZ_CP061284
Coordinates   2286316..2286936 (+) Length   206 a.a.
NCBI ID   WP_044155259.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2281316..2291936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS11650 (ICJ61_11650) - 2282454..2282960 (-) 507 WP_106020332.1 PTS glucose transporter subunit IIA -
  ICJ61_RS11655 (ICJ61_11655) - 2283097..2283516 (+) 420 WP_106020010.1 Hsp20/alpha crystallin family protein -
  ICJ61_RS11660 (ICJ61_11660) - 2283538..2283912 (-) 375 WP_024121828.1 YppG family protein -
  ICJ61_RS11665 (ICJ61_11665) - 2284100..2284288 (+) 189 WP_101864425.1 YppF family protein -
  ICJ61_RS11670 (ICJ61_11670) - 2284323..2284694 (-) 372 WP_024121830.1 YppE family protein -
  ICJ61_RS11675 (ICJ61_11675) - 2284740..2284985 (-) 246 WP_095713163.1 DUF5446 family protein -
  ICJ61_RS11680 (ICJ61_11680) sspM 2285183..2285287 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  ICJ61_RS11685 (ICJ61_11685) - 2285313..2286275 (-) 963 WP_188323085.1 DUF2515 domain-containing protein -
  ICJ61_RS11690 (ICJ61_11690) recU 2286316..2286936 (+) 621 WP_044155259.1 Holliday junction resolvase RecU Machinery gene
  ICJ61_RS11695 (ICJ61_11695) - 2286958..2289702 (+) 2745 WP_188323086.1 PBP1A family penicillin-binding protein -
  ICJ61_RS11700 (ICJ61_11700) - 2289776..2290270 (-) 495 WP_188323087.1 YpoC family protein -
  ICJ61_RS11705 (ICJ61_11705) nth 2290267..2290926 (-) 660 WP_010334708.1 endonuclease III -
  ICJ61_RS11710 (ICJ61_11710) dnaD 2290945..2291643 (-) 699 WP_044155229.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23935.07 Da        Isoelectric Point: 9.6373

>NTDB_id=481523 ICJ61_RS11690 WP_044155259.1 2286316..2286936(+) (recU) [Bacillus halotolerans strain XH-1]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=481523 ICJ61_RS11690 WP_044155259.1 2286316..2286936(+) (recU) [Bacillus halotolerans strain XH-1]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCAAGTGCGAAAGGTTGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

96.117

100

0.961