Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ICJ61_RS10880 Genome accession   NZ_CP061284
Coordinates   2148068..2149198 (+) Length   376 a.a.
NCBI ID   WP_188323045.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2134781..2157472 2148068..2149198 within 0


Gene organization within MGE regions


Location: 2134781..2157472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS21935 - 2134781..2135011 (+) 231 WP_024121679.1 membrane protein -
  ICJ61_RS10790 (ICJ61_10790) - 2135024..2135419 (-) 396 WP_024121680.1 UPF0715 family protein -
  ICJ61_RS22190 - 2135497..2135772 (-) 276 WP_024121681.1 hypothetical protein -
  ICJ61_RS10795 (ICJ61_10795) - 2136316..2136936 (-) 621 WP_188323044.1 lytic polysaccharide monooxygenase -
  ICJ61_RS10800 (ICJ61_10800) - 2137387..2137890 (+) 504 WP_151175083.1 DinB family protein -
  ICJ61_RS21940 - 2138097..2138315 (+) 219 WP_106022521.1 hypothetical protein -
  ICJ61_RS10805 (ICJ61_10805) - 2138461..2138973 (-) 513 WP_095713069.1 GNAT family N-acetyltransferase -
  ICJ61_RS21950 - 2139342..2139503 (-) 162 Protein_2112 N-acetyltransferase -
  ICJ61_RS10810 (ICJ61_10810) - 2139818..2140555 (-) 738 WP_106022520.1 hypothetical protein -
  ICJ61_RS22195 - 2141244..2141357 (-) 114 WP_223203934.1 hypothetical protein -
  ICJ61_RS21960 - 2141366..2141761 (-) 396 WP_223203876.1 hypothetical protein -
  ICJ61_RS10820 (ICJ61_10820) - 2141797..2141961 (-) 165 WP_151175084.1 hypothetical protein -
  ICJ61_RS10825 (ICJ61_10825) - 2142014..2142382 (-) 369 WP_106022517.1 hypothetical protein -
  ICJ61_RS10830 (ICJ61_10830) - 2142926..2143142 (-) 217 Protein_2118 hypothetical protein -
  ICJ61_RS10835 (ICJ61_10835) - 2143146..2143397 (-) 252 Protein_2119 hypothetical protein -
  ICJ61_RS10840 (ICJ61_10840) - 2143468..2143647 (+) 180 WP_106022516.1 hypothetical protein -
  ICJ61_RS10845 (ICJ61_10845) - 2143735..2144358 (-) 624 WP_024571441.1 hypothetical protein -
  ICJ61_RS10850 (ICJ61_10850) - 2144864..2145094 (+) 231 Protein_2122 hypothetical protein -
  ICJ61_RS22200 - 2145102..2145161 (-) 60 WP_255004945.1 hypothetical protein -
  ICJ61_RS22125 - 2145277..2145423 (-) 147 WP_316961074.1 UPF0715 family protein -
  ICJ61_RS21965 - 2145734..2145879 (-) 146 Protein_2125 XRE family transcriptional regulator -
  ICJ61_RS10860 (ICJ61_10860) - 2146151..2146630 (-) 480 WP_223203877.1 hypothetical protein -
  ICJ61_RS10865 (ICJ61_10865) - 2146724..2146957 (-) 234 WP_106022513.1 hypothetical protein -
  ICJ61_RS10870 (ICJ61_10870) - 2147305..2147565 (+) 261 WP_081638323.1 hypothetical protein -
  ICJ61_RS22345 - 2147890..2147934 (+) 45 WP_372588338.1 hypothetical protein -
  ICJ61_RS10880 (ICJ61_10880) rapC 2148068..2149198 (+) 1131 WP_188323045.1 tetratricopeptide repeat protein Regulator
  ICJ61_RS10885 (ICJ61_10885) - 2149188..2149331 (+) 144 WP_024121692.1 hypothetical protein -
  ICJ61_RS10890 (ICJ61_10890) - 2149360..2150247 (-) 888 Protein_2132 UV damage repair protein UvrX -
  ICJ61_RS10895 (ICJ61_10895) ppsA 2150541..2153144 (-) 2604 WP_188323046.1 phosphoenolpyruvate synthase -
  ICJ61_RS10900 (ICJ61_10900) - 2153349..2154498 (-) 1150 Protein_2134 IS3 family transposase -
  ICJ61_RS10905 (ICJ61_10905) - 2154946..2155030 (+) 85 Protein_2135 putative holin-like toxin -
  ICJ61_RS10910 (ICJ61_10910) - 2155689..2156591 (-) 903 WP_240671131.1 site-specific integrase -
  ICJ61_RS21970 - 2156681..2156827 (-) 147 WP_223203879.1 hypothetical protein -
  ICJ61_RS10915 (ICJ61_10915) - 2157053..2157472 (-) 420 WP_024121695.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44305.06 Da        Isoelectric Point: 6.1971

>NTDB_id=481522 ICJ61_RS10880 WP_188323045.1 2148068..2149198(+) (rapC) [Bacillus halotolerans strain XH-1]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGNEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=481522 ICJ61_RS10880 WP_188323045.1 2148068..2149198(+) (rapC) [Bacillus halotolerans strain XH-1]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAAACGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452