Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ICJ61_RS09205 Genome accession   NZ_CP061284
Coordinates   1763161..1764060 (+) Length   299 a.a.
NCBI ID   WP_188323728.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1758161..1769060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS09180 (ICJ61_09180) - 1758867..1760597 (+) 1731 WP_188323727.1 hypothetical protein -
  ICJ61_RS09185 (ICJ61_09185) - 1760594..1760875 (+) 282 WP_095713833.1 FlhB-like flagellar biosynthesis protein -
  ICJ61_RS22175 sucC 1761049..1762169 (+) 1121 Protein_1774 ADP-forming succinate--CoA ligase subunit beta -
  ICJ61_RS09200 (ICJ61_09200) sucD 1762198..1763100 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  ICJ61_RS09205 (ICJ61_09205) dprA 1763161..1764060 (+) 900 WP_188323728.1 DNA-processing protein DprA Machinery gene
  ICJ61_RS09210 (ICJ61_09210) topA 1764251..1766326 (+) 2076 WP_188323729.1 type I DNA topoisomerase -
  ICJ61_RS09215 (ICJ61_09215) trmFO 1766402..1767709 (+) 1308 WP_151175024.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ICJ61_RS09220 (ICJ61_09220) xerC 1767777..1768691 (+) 915 WP_188323730.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32943.20 Da        Isoelectric Point: 9.5378

>NTDB_id=481518 ICJ61_RS09205 WP_188323728.1 1763161..1764060(+) (dprA) [Bacillus halotolerans strain XH-1]
MDQAAACLITCRINQLLSPSLLLKWWKADPSLSLSNPSCALETASRGKVKAAALKNKIEEQYPKLQHLLSVYQQQGIKVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLVLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=481518 ICJ61_RS09205 WP_188323728.1 1763161..1764060(+) (dprA) [Bacillus halotolerans strain XH-1]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCATTGTCACTGTCAAATCCTTCATGTGCATTAGAAACAGCTTCGCGCGGCAAAGTAAAGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCAACAGCAAGGCATTAAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATCCGGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTGTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

82.943

100

0.829
  dprA Legionella pneumophila strain ERS1305867

40.071

94.314

0.378