Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ICJ61_RS08245 Genome accession   NZ_CP061284
Coordinates   1574947..1575522 (+) Length   191 a.a.
NCBI ID   WP_024121230.1    Uniprot ID   A0A9Q4HNH0
Organism   Bacillus halotolerans strain XH-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1569947..1580522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS08215 (ICJ61_08220) dapD 1570119..1570829 (+) 711 WP_024121226.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ICJ61_RS08220 (ICJ61_08225) - 1570900..1572024 (+) 1125 WP_106020381.1 N-acetyldiaminopimelate deacetylase -
  ICJ61_RS08225 (ICJ61_08230) - 1572085..1572330 (+) 246 WP_010334064.1 YkuS family protein -
  ICJ61_RS08230 (ICJ61_08235) - 1572365..1573168 (-) 804 WP_024121228.1 mechanosensitive ion channel family protein -
  ICJ61_RS08235 (ICJ61_08240) ahpA 1573413..1573955 (+) 543 WP_010334066.1 biofilm-specific peroxidase AhpA -
  ICJ61_RS08240 (ICJ61_08245) ykuV 1574037..1574495 (+) 459 WP_103671624.1 thiol-disulfide oxidoreductase YkuV -
  ICJ61_RS08245 (ICJ61_08250) rok 1574947..1575522 (+) 576 WP_024121230.1 transcriptional regulator Rok Regulator
  ICJ61_RS08250 (ICJ61_08255) - 1575564..1576529 (-) 966 WP_024121231.1 hypothetical protein -
  ICJ61_RS08255 (ICJ61_08260) - 1576662..1577261 (+) 600 WP_024121232.1 molybdenum cofactor guanylyltransferase -
  ICJ61_RS08260 (ICJ61_08265) - 1577313..1578332 (+) 1020 WP_188323704.1 MoeB/ThiF family adenylyltransferase -
  ICJ61_RS08265 (ICJ61_08270) glp 1578350..1579642 (+) 1293 WP_106020378.1 gephyrin-like molybdotransferase Glp -
  ICJ61_RS08270 (ICJ61_08275) mobB 1579603..1580124 (+) 522 WP_106020377.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21761.69 Da        Isoelectric Point: 9.8783

>NTDB_id=481516 ICJ61_RS08245 WP_024121230.1 1574947..1575522(+) (rok) [Bacillus halotolerans strain XH-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSTSETKKEFRSERKTDSLPVLAELAAQEIRSYQPPS
QQQSAQPQLQSISSLPAGIPDGATRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGDIESAESATE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=481516 ICJ61_RS08245 WP_024121230.1 1574947..1575522(+) (rok) [Bacillus halotolerans strain XH-1]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGATTAGAACAATTAAATGAAGCTGAAGTAAAAGTCATTCGTGAATATCA
AATTGAACGCGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCACTTCCGAAACGAAAAAGGAGTTCC
GTTCTGAAAGAAAAACTGACTCTCTGCCAGTTCTCGCCGAGCTTGCAGCTCAGGAAATCAGAAGCTATCAGCCGCCATCA
CAGCAGCAGTCCGCCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGATGGAGCGACTAGAAGAAG
AAGAGGAACGGCAAGACCGGGATCTAAAGCAGCTAAACTGCGTGAAGCGGCTATTAAAACATTAAAACGCCACAACGCGG
CAATTAAGAGCTCCGAACTTCAAAAAGAGATTGAAAAGGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGTTTAATTAAAATGTATCCGGAAGTGAAAAAACCGTATCGCGGCCAGTACATTTTAGAGGGTGACATCGAATCAGCTGA
ATCAGCAACAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

94.764

100

0.948