Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ICJ61_RS08140 Genome accession   NZ_CP061284
Coordinates   1558346..1558810 (-) Length   154 a.a.
NCBI ID   WP_044156084.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553346..1563810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS08120 (ICJ61_08125) kinA 1553810..1555642 (+) 1833 WP_095714840.1 sporulation histidine kinase KinA -
  ICJ61_RS08125 (ICJ61_08130) - 1555639..1556822 (-) 1184 Protein_1562 aminotransferase A -
  ICJ61_RS08130 (ICJ61_08135) - 1557024..1557185 (-) 162 WP_003238943.1 hypothetical protein -
  ICJ61_RS08135 (ICJ61_08140) cheV 1557393..1558304 (+) 912 WP_024121210.1 chemotaxis protein CheV -
  ICJ61_RS08140 (ICJ61_08145) kre 1558346..1558810 (-) 465 WP_044156084.1 YkyB family protein Regulator
  ICJ61_RS08145 (ICJ61_08150) - 1558936..1560228 (-) 1293 WP_127695343.1 MFS transporter -
  ICJ61_RS08150 (ICJ61_08155) - 1560304..1560798 (-) 495 WP_081638296.1 L,D-transpeptidase family protein -
  ICJ61_RS08155 (ICJ61_08160) - 1560856..1561716 (-) 861 WP_127695341.1 metallophosphoesterase -
  ICJ61_RS08160 (ICJ61_08165) fadH 1561861..1562625 (+) 765 WP_127695339.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17885.67 Da        Isoelectric Point: 10.3545

>NTDB_id=481515 ICJ61_RS08140 WP_044156084.1 1558346..1558810(-) (kre) [Bacillus halotolerans strain XH-1]
MDDHAYSKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVTNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=481515 ICJ61_RS08140 WP_044156084.1 1558346..1558810(-) (kre) [Bacillus halotolerans strain XH-1]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACCGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGTCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAAGAATACGTCGGCATGAAAGAAAAGCCGCTTGTGA
CGAATCGCCAGCAGCCCGCTTATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

98.701

100

0.987