Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ICJ61_RS02300 Genome accession   NZ_CP061284
Coordinates   424204..424641 (-) Length   145 a.a.
NCBI ID   WP_024120178.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XH-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 419204..429641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS02270 (ICJ61_02270) - 419337..420473 (+) 1137 WP_127696008.1 zinc-dependent alcohol dehydrogenase -
  ICJ61_RS02275 (ICJ61_02275) - 420516..420941 (+) 426 WP_164848148.1 RDD family protein -
  ICJ61_RS02280 (ICJ61_02280) - 421053..421358 (+) 306 WP_237728892.1 YckD family protein -
  ICJ61_RS02285 (ICJ61_02285) - 421510..422238 (+) 729 WP_188323518.1 AAA family ATPase -
  ICJ61_RS02290 (ICJ61_02290) - 422311..423744 (+) 1434 WP_101860166.1 glycoside hydrolase family 1 protein -
  ICJ61_RS02295 (ICJ61_02295) nin/comJ 423779..424177 (-) 399 WP_188323519.1 competence protein ComJ Regulator
  ICJ61_RS02300 (ICJ61_02300) nucA/comI 424204..424641 (-) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  ICJ61_RS02305 (ICJ61_02305) tlpC 424839..426551 (-) 1713 WP_095714427.1 methyl-accepting chemotaxis protein TlpC -
  ICJ61_RS02310 (ICJ61_02310) hxlB 426664..427221 (-) 558 WP_101863966.1 6-phospho-3-hexuloisomerase -
  ICJ61_RS02315 (ICJ61_02315) hxlA 427227..427859 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  ICJ61_RS02320 (ICJ61_02320) hxlR 428091..428453 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15973.68 Da        Isoelectric Point: 4.1966

>NTDB_id=481493 ICJ61_RS02300 WP_024120178.1 424204..424641(-) (nucA/comI) [Bacillus halotolerans strain XH-1]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=481493 ICJ61_RS02300 WP_024120178.1 424204..424641(-) (nucA/comI) [Bacillus halotolerans strain XH-1]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTACCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917