Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   D39N_RS05445 Genome accession   NZ_CP061208
Coordinates   1113397..1114206 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain D39_P0     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108397..1119206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS05430 (D39N_01095) - 1110862..1112733 (-) 1872 WP_000150986.1 Eco57I restriction-modification methylase domain-containing protein -
  D39N_RS05435 (D39N_01096) - 1112808..1113062 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  D39N_RS05440 (D39N_01097) - 1113064..1113306 (-) 243 WP_000208080.1 DUF6290 family protein -
  D39N_RS05445 (D39N_01098) vicX 1113397..1114206 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  D39N_RS05450 (D39N_01099) micB 1114208..1115557 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  D39N_RS05455 (D39N_01100) micA 1115550..1116254 (-) 705 WP_000722076.1 response regulator YycF Regulator
  D39N_RS05460 (D39N_01101) mutY 1116309..1117484 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=481396 D39N_RS05445 WP_001289493.1 1113397..1114206(-) (vicX) [Streptococcus pneumoniae strain D39_P0]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=481396 D39N_RS05445 WP_001289493.1 1113397..1114206(-) (vicX) [Streptococcus pneumoniae strain D39_P0]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTCTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGTTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773