Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   D39N_RS02560 Genome accession   NZ_CP061208
Coordinates   519363..519629 (+) Length   88 a.a.
NCBI ID   WP_001819358.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain D39_P0     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 518790..519092 519363..519629 flank 271


Gene organization within MGE regions


Location: 518790..519629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS02555 (D39N_00516) - 518790..519237 (+) 448 Protein_513 IS30 family transposase -
  D39N_RS02560 (D39N_00517) HI0659 519363..519629 (+) 267 WP_001819358.1 helix-turn-helix transcriptional regulator Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9667.20 Da        Isoelectric Point: 4.6537

>NTDB_id=481386 D39N_RS02560 WP_001819358.1 519363..519629(+) (HI0659) [Streptococcus pneumoniae strain D39_P0]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=481386 D39N_RS02560 WP_001819358.1 519363..519629(+) (HI0659) [Streptococcus pneumoniae strain D39_P0]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCGACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

58.442

87.5

0.511