Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ICL80_RS08955 Genome accession   NZ_CP061205
Coordinates   2073346..2074167 (-) Length   273 a.a.
NCBI ID   WP_194211533.1    Uniprot ID   -
Organism   Kordiimonas pumila strain N18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2057583..2074854 2073346..2074167 within 0


Gene organization within MGE regions


Location: 2057583..2074854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICL80_RS08865 - 2057583..2059136 (-) 1554 WP_194211509.1 sodium/solute symporter -
  ICL80_RS08875 - 2059746..2060588 (-) 843 WP_194211510.1 DNA adenine methylase -
  ICL80_RS08880 - 2060585..2060836 (-) 252 WP_228073371.1 AlpA family transcriptional regulator -
  ICL80_RS08885 dcm 2060833..2062041 (-) 1209 WP_194211511.1 DNA (cytosine-5-)-methyltransferase -
  ICL80_RS08890 - 2062240..2062890 (-) 651 WP_194211512.1 recombinase family protein -
  ICL80_RS08895 - 2063049..2063639 (+) 591 WP_194211513.1 site-specific integrase -
  ICL80_RS08900 - 2063761..2064246 (+) 486 WP_194211514.1 hypothetical protein -
  ICL80_RS08905 - 2064294..2065463 (+) 1170 WP_194211515.1 hypothetical protein -
  ICL80_RS08910 - 2065545..2066312 (+) 768 WP_194211516.1 outer membrane beta-barrel protein -
  ICL80_RS08915 - 2066340..2066582 (+) 243 WP_194211517.1 hypothetical protein -
  ICL80_RS08920 - 2066569..2067213 (+) 645 WP_194211518.1 hypothetical protein -
  ICL80_RS08925 - 2067622..2068482 (-) 861 WP_194211520.1 ArdC family protein -
  ICL80_RS08930 - 2068555..2069076 (-) 522 WP_194211522.1 hypothetical protein -
  ICL80_RS08935 - 2069089..2069388 (-) 300 WP_194211524.1 helix-turn-helix domain-containing protein -
  ICL80_RS08940 - 2069580..2069954 (-) 375 WP_194211526.1 hypothetical protein -
  ICL80_RS08945 - 2070106..2071386 (+) 1281 WP_194211528.1 hypothetical protein -
  ICL80_RS08950 - 2071537..2073279 (+) 1743 WP_194211530.1 recombinase family protein -
  ICL80_RS08955 comEC 2073346..2074167 (-) 822 WP_194211533.1 ComEC/Rec2 family competence protein Machinery gene
  ICL80_RS08960 - 2074177..2074854 (-) 678 WP_194211534.1 hypothetical protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30675.31 Da        Isoelectric Point: 5.3343

>NTDB_id=481346 ICL80_RS08955 WP_194211533.1 2073346..2074167(-) (comEC) [Kordiimonas pumila strain N18]
MNLKIFDVEHGACALLTCDDNTRLMLDAGHNATTGWRPGDYLVANGIHRLDMLAITNYDEDHVSGIENLLDQVDVSWLSR
NVSVSTGNLRELKSEDGMGNGMAKLCQAIDHTFTGDGSSPLPTFSGLQREKFSCSYPNFDDENNLSLVNFLDCNGTGVLF
TGDLERAGWEHLVQKASFRNAMAATNILIAPHHGRIKESDRDFFREFYRKYFPNVYYVVISDKGYQHDTQQTLPLFQSFA
KGGPFRDGTRKVLTTRKDGLIEFRLEDGSWGPF

Nucleotide


Download         Length: 822 bp        

>NTDB_id=481346 ICL80_RS08955 WP_194211533.1 2073346..2074167(-) (comEC) [Kordiimonas pumila strain N18]
ATGAATCTTAAAATTTTTGACGTCGAGCATGGAGCATGTGCACTACTAACGTGTGACGACAATACTCGGTTAATGTTGGA
TGCAGGTCACAACGCTACCACCGGATGGCGTCCTGGCGATTATTTGGTAGCTAACGGAATTCATCGGCTCGACATGCTTG
CCATCACCAATTATGACGAGGATCACGTTAGCGGAATTGAGAACTTGCTAGACCAAGTAGATGTCTCGTGGCTTTCTAGA
AATGTCTCTGTCTCGACAGGCAATCTAAGAGAATTGAAAAGCGAAGATGGGATGGGAAATGGAATGGCGAAATTATGTCA
GGCAATTGACCATACTTTTACAGGAGATGGCTCAAGCCCACTTCCGACTTTTTCAGGTTTACAAAGAGAGAAGTTTTCTT
GTTCCTATCCAAATTTCGATGATGAGAACAATCTAAGCCTTGTCAATTTCCTTGACTGTAATGGCACGGGAGTCCTCTTC
ACGGGAGACTTAGAGCGTGCAGGATGGGAACATCTTGTTCAAAAAGCGTCATTTAGAAATGCGATGGCAGCAACCAATAT
CTTAATTGCACCTCATCATGGACGCATTAAAGAATCTGATCGAGACTTTTTCCGAGAGTTTTATAGGAAATATTTTCCCA
ATGTTTACTATGTAGTTATCTCGGACAAGGGTTATCAGCATGACACTCAGCAGACTCTACCCTTGTTCCAGTCCTTCGCG
AAAGGCGGTCCTTTCAGAGATGGCACTAGAAAGGTGTTAACCACGCGAAAGGATGGTTTGATAGAATTTCGCCTAGAAGA
TGGTTCGTGGGGTCCATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila str. Paris

52.091

96.337

0.502