Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ICJ70_RS09650 Genome accession   NZ_CP061203
Coordinates   1907668..1909359 (+) Length   563 a.a.
NCBI ID   WP_257520148.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain NEB659     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1902668..1914359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ70_RS09625 (ICJ70_09540) xseB 1903083..1903316 (+) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -
  ICJ70_RS09630 (ICJ70_09545) - 1903320..1904201 (+) 882 WP_221680168.1 polyprenyl synthetase family protein -
  ICJ70_RS09635 (ICJ70_09550) dxs 1904365..1906266 (+) 1902 WP_263081993.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ICJ70_RS09640 (ICJ70_09555) - 1906266..1907084 (+) 819 WP_221680170.1 TlyA family RNA methyltransferase -
  ICJ70_RS09645 (ICJ70_09560) argR 1907185..1907634 (+) 450 WP_004231170.1 transcriptional regulator ArgR -
  ICJ70_RS09650 (ICJ70_09565) recN 1907668..1909359 (+) 1692 WP_257520148.1 DNA repair protein RecN Machinery gene
  ICJ70_RS09655 (ICJ70_09570) - 1909482..1910429 (+) 948 WP_009370207.1 SpoIVB peptidase S55 domain-containing protein -
  ICJ70_RS09660 (ICJ70_09575) spo0A 1910815..1911606 (+) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  ICJ70_RS09665 (ICJ70_09580) - 1911905..1912084 (+) 180 WP_337976975.1 hypothetical protein -
  ICJ70_RS09670 (ICJ70_09585) - 1912363..1913934 (+) 1572 WP_274769549.1 FapA family protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63424.23 Da        Isoelectric Point: 4.6214

>NTDB_id=481306 ICJ70_RS09650 WP_257520148.1 1907668..1909359(+) (recN) [Lysinibacillus capsici strain NEB659]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KTYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGST
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=481306 ICJ70_RS09650 WP_257520148.1 1907668..1909359(+) (recN) [Lysinibacillus capsici strain NEB659]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGAAAATCCATTATCATTGATGCGGTGCATTTACTTGCAGGTGGACGAGGTAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGAGATTTGAATGATACTGGTAAAAGTATTTG
CCGAGTGAATGGTAAGCTTGTGCCTTTATCGGTACTAAGAGACATTGGGGCAAGTCTCATTGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATCAATTTGCTTGATCAATTTGCAGAAGAAGAGTTGTCGCCGATTCAA
AAAACCTATCGAGCGCAATACGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCGATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGCTCTAGTGCAGCCTATGAAGCCATTCAAGGT
GAAACAAAAGGGCTTGATTGGATCGGAACGGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAGCAATTCAAAGA
ATCATCTGAGGCAGTTACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTAG
AATTTGACCCTGCGCGTTTAAACGAGGTTGAGCAGCGATTAGCGTTGTTGCAAACTTTAAAACGCAAATATGGTTCGACA
GTGGAAGAGATCTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CCCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTCGACGCAAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAGCCACCAAAGTC
TTTACCGAAAATTGCATCAGGCGGAGAGTTATCACGAATGATGCTAGCATTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATATTTGATGAGGTGGATACAGGTGTTAGTGGTCGTGTTGCGCAAGCGATTGCAGAGAAAATTGCCGCA
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATCAA
AAAAGAAGTCGAACATGATCGAACGTTTACTTCCTTATCAGAAATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACTGAAATTACAGCTTTGACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.513

100

0.538