Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ICJ70_RS02875 Genome accession   NZ_CP061203
Coordinates   540839..541789 (+) Length   316 a.a.
NCBI ID   WP_004231947.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain NEB659     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535839..546789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ70_RS02855 (ICJ70_02835) - 536354..537499 (+) 1146 WP_004231941.1 M20 peptidase aminoacylase family protein -
  ICJ70_RS02860 (ICJ70_02840) - 537499..538323 (+) 825 WP_221681483.1 GNAT family N-acetyltransferase -
  ICJ70_RS02865 (ICJ70_02845) menC 538345..539451 (+) 1107 WP_337976671.1 o-succinylbenzoate synthase -
  ICJ70_RS02870 (ICJ70_02850) - 539502..540554 (+) 1053 WP_221681472.1 hypothetical protein -
  ICJ70_RS02875 (ICJ70_02855) ceuB 540839..541789 (+) 951 WP_004231947.1 ABC transporter permease Machinery gene
  ICJ70_RS02880 (ICJ70_02860) - 541782..542735 (+) 954 WP_004231949.1 iron chelate uptake ABC transporter family permease subunit -
  ICJ70_RS02885 (ICJ70_02865) - 542732..543493 (+) 762 WP_221681470.1 ABC transporter ATP-binding protein -
  ICJ70_RS02890 (ICJ70_02870) - 543558..544583 (+) 1026 WP_221681468.1 siderophore ABC transporter substrate-binding protein -
  ICJ70_RS02895 (ICJ70_02875) - 544585..544899 (+) 315 WP_221681464.1 antibiotic biosynthesis monooxygenase -
  ICJ70_RS02900 (ICJ70_02880) - 544991..545536 (-) 546 WP_257520683.1 hypothetical protein -
  ICJ70_RS02905 (ICJ70_02885) - 545876..546778 (+) 903 WP_221681461.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34796.00 Da        Isoelectric Point: 10.1980

>NTDB_id=481297 ICJ70_RS02875 WP_004231947.1 540839..541789(+) (ceuB) [Lysinibacillus capsici strain NEB659]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=481297 ICJ70_RS02875 WP_004231947.1 540839..541789(+) (ceuB) [Lysinibacillus capsici strain NEB659]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGCTGTCTATTGTGTCGCTCTTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TGGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTTTCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTAGGTGTATTGATTTCCATGATGTTCTTTACGAACGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTTACAACATTCTTTGCCTATAAGGCGAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTACGAACTGTTATACGTAAGTGTACC
AATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGAGAGGATTTTGCAAAAAATCTTGGTC
TATCCTATAAATTTGTAGTCAATTTAGGCTTGGTGTTGGTAGCTCTTATCTCCACGACAGTGGTGTTAACAGTCGGTATC
ATTCCATTCCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTTAAAGGTGATAATTTGGCAAAAACCTTGCCGCACAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGTGATATTTTAGGACGAGTACTGATATTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528