Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ICJ70_RS01085 Genome accession   NZ_CP061203
Coordinates   224022..225398 (+) Length   458 a.a.
NCBI ID   WP_337976536.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain NEB659     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 219022..230398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ70_RS01065 (ICJ70_01050) - 219364..219834 (+) 471 WP_004233573.1 CtsR family transcriptional regulator -
  ICJ70_RS01070 (ICJ70_01055) - 219848..220390 (+) 543 WP_004233574.1 UvrB/UvrC motif-containing protein -
  ICJ70_RS01075 (ICJ70_01060) - 220387..221496 (+) 1110 WP_337976535.1 protein arginine kinase -
  ICJ70_RS01080 (ICJ70_01065) - 221486..223930 (+) 2445 WP_257520823.1 ATP-dependent Clp protease ATP-binding subunit -
  ICJ70_RS01085 (ICJ70_01070) radA 224022..225398 (+) 1377 WP_337976536.1 DNA repair protein RadA Machinery gene
  ICJ70_RS01090 (ICJ70_01075) - 225684..226769 (+) 1086 WP_274770964.1 PIN/TRAM domain-containing protein -
  ICJ70_RS01095 (ICJ70_01080) ispD 226781..227476 (+) 696 WP_274770962.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ICJ70_RS01100 (ICJ70_01085) epsC 227791..228732 (+) 942 WP_004233580.1 serine O-acetyltransferase EpsC -
  ICJ70_RS01105 (ICJ70_01090) ispF 228874..229350 (+) 477 WP_004233581.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50259.08 Da        Isoelectric Point: 7.1218

>NTDB_id=481296 ICJ70_RS01085 WP_337976536.1 224022..225398(+) (radA) [Lysinibacillus capsici strain NEB659]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLEVISQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPSSNIGGWEFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=481296 ICJ70_RS01085 WP_337976536.1 224022..225398(+) (radA) [Lysinibacillus capsici strain NEB659]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAGTCTGCTAAATGGATGGGAAGATGCCCTGGGTG
TGGTGAATGGAATAAAATGGTGGAAGAAGTAGAGATGGTTGCAAAAGGTCCACGAGGAGCATTTCAACATTCTGCTACAG
TCACACAAAAGGCAATCCCGATTATCCAAGTGGAAGCTACTGAAGAATCGCGTGTAGCAACAGAAATGGGCGAACTCAAT
CGTGTATTAGGCGGGGGCATTGTACCTGGTTCTCTAGTATTGATCGGGGGCGATCCTGGAATAGGGAAATCAACATTACT
ATTACAGGTTTCCGCATTACTATCGAATAAAGGGCATCGCGTACTTTATATTTCTGGAGAGGAATCTATTCGTCAAACGA
AATTACGAGCAGAGCGTTTAGAAGTGATTTCTCAAGAGCTTTACATATACTCCGAAACAAACCTAGAGTTTTTAAACCAA
ACCATTGATGAAGTACAGCCTAAATTTGTTATTGTCGATTCCATACAAACGGTCTTTCATCCAGAAGTAACAAGCGCCCC
TGGTAGTGTCTCACAGGTTCGTGAATGTACAGCTGAGCTGATGCGAATCGCTAAAACCAAAGGCATTGCTATTTTTCTAG
TAGGGCATGTAACAAAAGAGGGACAAATTGCTGGGCCACGTATTTTAGAGCATATGGTGGATACTGTACTGTACTTTGAA
GGGGAAAGACATCATAATCATCGTATTTTACGAAGCCAAAAAAACCGCTTCGGATCTACAAATGAAATTGCTATATTTGA
AATGCTTCAAGGAGGGTTAAAGGAAGTTCTAAACCCTTCGGAGTTATTTTTACAGGAGCGTTCACAAGGTGCGGCGGGGT
CAACTATTGTAGCATCAATGGAGGGGACAAGGCCAATCCTTGTTGAAATTCAATCCTTAGTTACACCTACAAGCTTTAAC
TATCCTAAACGTATGGCCACAGGTGTCGATCAAAACCGAGTACAATTGCTAATGGCTGTACTAGAAAAGCGTATGGGTCT
CATGCTACAAGCTCAGGATGCATATATTAAAGTTGCTGGTGGTGTCAAGCTGGATGAGCCAGCAATAGATTTAGCAGTGT
TGACAAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACGGATTGTTTTATTGGTGAGGTTGGACTAACAGGT
GAGGTCCGTCGGGTATCACGTATAGAACAGCGGGTCATTGAAGCGGCGAAGCTTGGATTTAAAAGAGCCTTCATTCCTTC
TTCCAATATTGGTGGTTGGGAATTTCCGCAGGGAATTGAAATTGTTGGTGTAGAAACGATAAAAGATGCACTAAATGCAT
GCTTTAGAGAGTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.485

99.127

0.699
  radA Streptococcus pneumoniae Rx1

62.061

99.563

0.618
  radA Streptococcus pneumoniae D39

62.061

99.563

0.618
  radA Streptococcus pneumoniae R6

62.061

99.563

0.618
  radA Streptococcus pneumoniae TIGR4

62.061

99.563

0.618
  radA Streptococcus mitis NCTC 12261

62.061

99.563

0.618
  radA Streptococcus mitis SK321

62.061

99.563

0.618