Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J4T81_RS08560 Genome accession   NZ_CP072204
Coordinates   1812452..1813879 (-) Length   475 a.a.
NCBI ID   WP_029397760.1    Uniprot ID   -
Organism   Escherichia coli strain LWY6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1807452..1818879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4T81_RS08530 (J4T81_08530) yeeZ 1807507..1808331 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  J4T81_RS08535 (J4T81_08535) yeeY 1808377..1809306 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  J4T81_RS08540 (J4T81_08540) yoeI 1809521..1809583 (+) 63 WP_010723108.1 membrane protein YoeI -
  J4T81_RS08545 (J4T81_08545) plaP 1809573..1810931 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J4T81_RS08550 (J4T81_08550) tsuA 1811110..1812168 (+) 1059 WP_029397759.1 thiosulfate utilization transporter TsuA/YeeE -
  J4T81_RS08555 (J4T81_08555) tsuB 1812182..1812409 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J4T81_RS08560 (J4T81_08560) sbcB 1812452..1813879 (-) 1428 WP_029397760.1 exodeoxyribonuclease I Machinery gene
  J4T81_RS08565 (J4T81_08565) dacD 1814088..1815254 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J4T81_RS08570 (J4T81_08570) sbmC 1815373..1815846 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  J4T81_RS08575 (J4T81_08575) yeeA 1816044..1817102 (+) 1059 WP_001200890.1 FUSC family protein -
  J4T81_RS08580 (J4T81_08580) tmaR 1817274..1817603 (+) 330 WP_000450409.1 DUF496 family protein -
  J4T81_RS08585 (J4T81_08585) - 1817704..1817886 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  J4T81_RS08590 (J4T81_08590) - 1817940..1818086 (+) 147 Protein_1692 transposase domain-containing protein -
  J4T81_RS08595 (J4T81_08595) - 1818375..1818455 (-) 81 Protein_1693 hypothetical protein -
  J4T81_RS08600 (J4T81_08600) yeeW 1818501..1818695 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4720

>NTDB_id=481173 J4T81_RS08560 WP_029397760.1 1812452..1813879(-) (sbcB) [Escherichia coli strain LWY6]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPIKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=481173 J4T81_RS08560 WP_029397760.1 1812452..1813879(-) (sbcB) [Escherichia coli strain LWY6]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACAGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGATTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579