Detailed information NTG0481160

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4T81_RS04970
• Genome accession: NZ_CP072204
• Coordinates: 1035446..1036438 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LWY6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1030446..1041438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4T81_RS04940 (J4T81_04940)	ispD	1030507..1031217 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4T81_RS04945 (J4T81_04945)	ispF	1031217..1031696 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4T81_RS04950 (J4T81_04950)	truD	1031693..1032742 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
J4T81_RS04955 (J4T81_04955)	surE	1032723..1033484 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J4T81_RS04960 (J4T81_04960)	pcm	1033478..1034104 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J4T81_RS04965 (J4T81_04965)	nlpD	1034289..1035383 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
J4T81_RS04970 (J4T81_04970)	rpoS	1035446..1036438 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J4T81_RS04975 (J4T81_04975)	-	1036559..1036966 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
J4T81_RS04980 (J4T81_04980)	-	1037113..1037706 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
J4T81_RS04985 (J4T81_04985)	-	1037706..1039133 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
J4T81_RS04990 (J4T81_04990)	-	1039144..1039380 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
J4T81_RS04995 (J4T81_04995)	ygbN	1039419..1040783 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=481160 J4T81_RS04970 WP_000081550.1 1035446..1036438(+) (rpoS) [Escherichia coli strain LWY6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=481160 J4T81_RS04970 WP_000081550.1 1035446..1036438(+) (rpoS) [Escherichia coli strain LWY6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715