Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IAQ67_RS25235 Genome accession   NZ_CP061172
Coordinates   5496745..5498118 (-) Length   457 a.a.
NCBI ID   WP_013312184.1    Uniprot ID   A0A0M1Q9A3
Organism   Paenibacillus peoriae strain ZF390     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5491745..5503118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ67_RS25210 (IAQ67_25210) ispF 5492335..5492811 (-) 477 WP_025723806.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  IAQ67_RS25215 (IAQ67_25215) ispD 5492808..5493506 (-) 699 WP_134903071.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IAQ67_RS25220 (IAQ67_25220) - 5493577..5494662 (-) 1086 WP_190298055.1 PIN/TRAM domain-containing protein -
  IAQ67_RS25225 (IAQ67_25225) pssA 5494855..5495601 (-) 747 WP_025723803.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  IAQ67_RS25230 (IAQ67_25230) disA 5495656..5496732 (-) 1077 WP_013312183.1 DNA integrity scanning diadenylate cyclase DisA -
  IAQ67_RS25235 (IAQ67_25235) radA 5496745..5498118 (-) 1374 WP_013312184.1 DNA repair protein RadA Machinery gene
  IAQ67_RS25240 (IAQ67_25240) clpC 5498359..5500803 (-) 2445 WP_190298056.1 ATP-dependent protease ATP-binding subunit ClpC -
  IAQ67_RS25245 (IAQ67_25245) - 5500848..5501912 (-) 1065 WP_103050267.1 protein arginine kinase -
  IAQ67_RS25250 (IAQ67_25250) - 5501941..5502465 (-) 525 WP_103050266.1 UvrB/UvrC motif-containing protein -
  IAQ67_RS25255 (IAQ67_25255) - 5502535..5502999 (-) 465 WP_013312188.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49244.92 Da        Isoelectric Point: 6.7620

>NTDB_id=481156 IAQ67_RS25235 WP_013312184.1 5496745..5498118(-) (radA) [Paenibacillus peoriae strain ZF390]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=481156 IAQ67_RS25235 WP_013312184.1 5496745..5498118(-) (radA) [Paenibacillus peoriae strain ZF390]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTGCCTATTATAGAGGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTACCGGGTTCACTCGTTTTGGTGGGCGGTGATCCGGGAATCGGTAAATCTACGCT
TATGCTGCAAACATCTAATGAGCTGGCTTTAACTGGTTTAAAGGTGCTGTACGTGTCTGGTGAGGAATCTGTCCGTCAAA
CGAAACTACGTGCAGATCGGCTCGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTAGACAGCTTGAAGCCAGAGTTTCTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGTAGTGTGGCTCAAGTGCGGGAGTGTACTTCACGCTTTATGCGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTGGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCACGTTTGTTGGAACATATGGTCGATTGTGTGCTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTTTTGCGTGCAGTTAAAAATCGTTTCGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTGTCGAATCCTTCTGAACTATTCCTGTCTGAACGACCACTGGGGGTGGCGG
GTTCTACTGTTGTAGCCAGTATGGAGGGAACCCGACCTGTATTGGTTGAGCTGCAAGCATTGATTGCAGCTACGCATTTC
CCATCTCCGCGCCGAATGGGCACAGGAGTCGACCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAACGTAGCCGGAGGCGTGAAGCTGGATGAACCGGCGGTGGATTTGGCTA
TAGCTGTGAGCATTGCTTCCAGCTTCAGGGATGCTCCTACAAAGCCGTACGATGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAGGTGCGCGCGGTATCCCGAGCAGAACAGCGAGTACGAGAAGCAGAGAAACTAGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGCTGGACACATCCGAAAGGGATACAAATCATAGGAGTAGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q9A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.672
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58