Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IAQ67_RS15485 Genome accession   NZ_CP061172
Coordinates   3455357..3455806 (+) Length   149 a.a.
NCBI ID   WP_190297205.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain ZF390     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3450357..3460806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ67_RS15460 (IAQ67_15460) - 3450562..3451251 (-) 690 WP_190297202.1 hypothetical protein -
  IAQ67_RS15465 (IAQ67_15465) - 3451490..3452398 (+) 909 WP_190297203.1 copper amine oxidase N-terminal domain-containing protein -
  IAQ67_RS15470 (IAQ67_15470) - 3452629..3453378 (-) 750 WP_190297204.1 IS3 family transposase -
  IAQ67_RS15475 (IAQ67_15475) - 3453568..3453723 (-) 156 WP_223821883.1 hypothetical protein -
  IAQ67_RS15480 (IAQ67_15480) - 3454922..3455164 (+) 243 WP_223821884.1 DUF2500 family protein -
  IAQ67_RS15485 (IAQ67_15485) nucA/comI 3455357..3455806 (+) 450 WP_190297205.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IAQ67_RS15490 (IAQ67_15490) - 3456409..3457476 (+) 1068 WP_190297206.1 hypothetical protein -
  IAQ67_RS15495 (IAQ67_15495) - 3458418..3458606 (-) 189 WP_190297207.1 hypothetical protein -
  IAQ67_RS15500 (IAQ67_15500) - 3459163..3459444 (+) 282 WP_190297208.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16238.40 Da        Isoelectric Point: 6.4783

>NTDB_id=481144 IAQ67_RS15485 WP_190297205.1 3455357..3455806(+) (nucA/comI) [Paenibacillus peoriae strain ZF390]
MIRWMITLLATVLLAGCSVQQQVEVTPSKTAPVGSQVTQVSSETVKLEFPSGKYPETAQHIKEAIAAGHTNTCTIDRDGA
DHNRELSLKDVPTRKGKDRDEWPMAMCAEGGVGADVKYISPKDNRGAGSWVGHKLNEYPDGTKIEFIIN

Nucleotide


Download         Length: 450 bp        

>NTDB_id=481144 IAQ67_RS15485 WP_190297205.1 3455357..3455806(+) (nucA/comI) [Paenibacillus peoriae strain ZF390]
ATGATTAGATGGATGATTACCTTACTTGCTACAGTCCTATTAGCTGGCTGCAGTGTGCAACAACAGGTAGAAGTTACACC
GAGCAAAACGGCGCCTGTTGGTTCACAAGTAACCCAAGTATCATCAGAAACCGTAAAACTTGAGTTTCCCTCAGGAAAGT
ACCCGGAAACAGCACAGCACATCAAGGAGGCCATAGCAGCCGGACACACCAATACATGTACCATTGATCGTGACGGAGCT
GATCATAACCGTGAACTGTCACTTAAAGATGTACCCACGCGCAAGGGCAAAGACCGCGATGAATGGCCAATGGCAATGTG
TGCGGAAGGCGGAGTGGGAGCGGACGTTAAATACATATCACCAAAGGATAACCGTGGGGCTGGATCATGGGTAGGTCACA
AGCTGAATGAATATCCAGACGGCACAAAGATTGAATTTATTATTAATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.912

76.51

0.497