Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   IAQ67_RS12140 Genome accession   NZ_CP061172
Coordinates   2720821..2722671 (+) Length   616 a.a.
NCBI ID   WP_103048527.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain ZF390     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2715821..2727671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ67_RS12115 (IAQ67_12115) - 2716560..2717783 (+) 1224 WP_103048525.1 Ger(x)C family spore germination protein -
  IAQ67_RS12120 (IAQ67_12120) - 2717789..2718019 (+) 231 WP_023988612.1 hypothetical protein -
  IAQ67_RS12125 (IAQ67_12125) - 2718123..2718269 (+) 147 WP_155252442.1 hypothetical protein -
  IAQ67_RS12130 (IAQ67_12130) - 2718581..2718991 (+) 411 WP_023988613.1 MarR family winged helix-turn-helix transcriptional regulator -
  IAQ67_RS12135 (IAQ67_12135) rcrP 2719065..2720828 (+) 1764 WP_190299301.1 ABC transporter ATP-binding protein Regulator
  IAQ67_RS12140 (IAQ67_12140) rcrQ 2720821..2722671 (+) 1851 WP_103048527.1 ABC transporter ATP-binding protein Regulator
  IAQ67_RS12145 (IAQ67_12145) - 2722792..2723100 (+) 309 WP_025723019.1 hypothetical protein -
  IAQ67_RS12150 (IAQ67_12150) - 2723535..2724428 (-) 894 WP_103048528.1 LysR family transcriptional regulator -
  IAQ67_RS12155 (IAQ67_12155) - 2724774..2725214 (+) 441 WP_023988632.1 DMT family transporter -
  IAQ67_RS12160 (IAQ67_12160) - 2725236..2726681 (+) 1446 WP_190299302.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67874.38 Da        Isoelectric Point: 6.1585

>NTDB_id=481142 IAQ67_RS12140 WP_103048527.1 2720821..2722671(+) (rcrQ) [Paenibacillus peoriae strain ZF390]
MDKNEHTVDSQQMKMNQRGPMGKGPAGGSGAGEKANNFKKTISQLVSYSKAYVPMIILAMVLGLVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIIATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNTDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAASRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=481142 IAQ67_RS12140 WP_103048527.1 2720821..2722671(+) (rcrQ) [Paenibacillus peoriae strain ZF390]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCGAGGTCCCATGGGTAAAGGACCAGCGGG
GGGCAGTGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTCGCTATGGTACTGGGCCTGGTCGGCTCTACCCTCAACGTGATTGGCCCCGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATTTTTAACTATTTCCAGGGCTTCATTACGGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGT
GTAACCAACGATGTCGATACCATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACGAACTGGATCATGACCGTTACCGGAATTATAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGTATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAATTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTTTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACCGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATACAGATCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGTCCGACAGGTGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATCAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCTAGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGTTGGCTAAAGGCGGCTTCTATGCCGACCTATACAACAGTCAGTTTGAAC
ATGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.499

93.669

0.529