Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J6342_RS04945 Genome accession   NZ_CP072196
Coordinates   1025863..1027212 (-) Length   449 a.a.
NCBI ID   WP_014938017.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190604J2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1020863..1032212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6342_RS04925 (J6342_04925) - 1021540..1022970 (-) 1431 WP_014938021.1 redoxin domain-containing protein -
  J6342_RS04930 (J6342_04930) - 1023134..1023583 (-) 450 WP_014938020.1 hypothetical protein -
  J6342_RS04935 (J6342_04935) - 1023693..1024163 (-) 471 WP_014938019.1 heme-binding domain-containing protein -
  J6342_RS04940 (J6342_04940) - 1024170..1025816 (-) 1647 WP_038693803.1 Ig-like domain-containing protein -
  J6342_RS04945 (J6342_04945) radA 1025863..1027212 (-) 1350 WP_014938017.1 DNA repair protein RadA Machinery gene
  J6342_RS04950 (J6342_04950) - 1027306..1028070 (+) 765 WP_014938016.1 enoyl-CoA hydratase/isomerase family protein -
  J6342_RS04955 (J6342_04955) - 1028148..1030280 (-) 2133 WP_038693801.1 S8 family peptidase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49708.25 Da        Isoelectric Point: 7.4843

>NTDB_id=481111 J6342_RS04945 WP_014938017.1 1025863..1027212(-) (radA) [Riemerella anatipestifer strain 20190604J2-1]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKVTNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDIAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHNIKIVEVSKIEDFHEEIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=481111 J6342_RS04945 WP_014938017.1 1025863..1027212(-) (radA) [Riemerella anatipestifer strain 20190604J2-1]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCGCAACATTCCAAATGGCACGGACAATGCCAAAATTG
TGGACAATGGAACACCTTAGTGGAAGAGATTGCTGAGAAAACAACCTCTAAAAATTATGCAGGAGATTTCGGAAGGCAAC
ATCTCATCAATATCATAGAAGTAGAAACACAAGCCGAGCAACGCATTAAAACTCCAAGCGAAGAACTTAACAGGGTTTTG
GGTGGCGGTATTGTTTTAGGTTCGGTAACCCTTATTGGCGGAGAACCAGGTATAGGGAAATCTACATTACTGTTGCAATT
AGCCCTTAAAATGAAGAAAAAAATTCTCTATGTTTCGGGGGAAGAAAGTGCCTCTCAAATCAAAATGAGAGCAGATAGAC
TAACGGAACTTCAAAATCCGAATTGTTTTTTATACACCGAAACTTCAATAGAGAAAATCTTACACGAAGCCAAAAAACTT
CAGCCCGATTTTATGATTGTGGACTCTATACAAACTTTACATTCGCAGGTGATGGAAAGTTCCCCAGGTACGGTGTCTCA
GATTAGAGAATGTGCTTCAGAAGTTATAAAGTTTGCAAAAGTGACTAACACGCCTGTTTTTTTAGTGGGACATATTACTA
AAGATGGACAAATAGCTGGACCAAAAGTATTGGAGCATATGGTAGATGTGGTTCTTAATTTTGATGGTGATAGAAACCAT
TTGTTTAGACTTTTGAGAGCAAATAAAAATCGTTTTGGTTCTACTGCGGAGATTGGTATTTATGAGATGATTTCGGCAGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACTAAAAAATCTGAGGAATTTTCAGGGAATGCGGTAGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTTGTAAGTACAGCCGTGTATGGCACACCACAGAGAAGT
TCTACGGGTTTTGATGCTAAAAGACTTAATATGCTTTTGGCAGTTTTAGAGAAACGCTCTGGTTTTCAACTCGGGGCTAA
AGATGTATTCTTAAATATTACAGGAGGTATCAAAACAGACGACCCTGCTCTAGATTTGGCTGTAGTTGCCGCTATCTTAT
CTTCCAACGAGGATATTGCAGTATCGGAACATTATTGTTTTGCTGGGGAAATTGGTCTTAGTGGAGAAATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAATTAGGCTATCATAAAATTTTTGTTTCTAAACAAAATAAAATACC
AAAGAAAAAACACAATATAAAAATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAGATATTTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)

AAA domain (AAA_25)

(63-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

47.473

100

0.481
  radA Streptococcus pneumoniae Rx1

47.368

100

0.481
  radA Streptococcus pneumoniae D39

47.368

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.481
  radA Streptococcus pneumoniae R6

47.368

100

0.481
  radA Streptococcus mitis SK321

47.241

100

0.477
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.611

96.214

0.468