NTDB

Overview

Name	rapF	Type	Regulator
Locus tag	IAU66_RS18225	Genome accession	NZ_CP061168
Coordinates	3702996..3704141 (+)	Length	381 a.a.
NCBI ID	WP_024085922.1	Uniprot ID	-
Organism	Bacillus amyloliquefaciens strain T-5
Function	inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3697996..3709141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAU66_RS18205	-	3698471..3699187 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
IAU66_RS18210	narK	3699285..3700475 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
IAU66_RS18215	argS	3700609..3702279 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
IAU66_RS18220	-	3702276..3702704 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
IAU66_RS18225	rapF	3702996..3704141 (+)	1146	WP_024085922.1	Rap family tetratricopeptide repeat protein	Regulator
IAU66_RS18230	-	3704125..3704244 (+)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
IAU66_RS18235	speB	3704367..3704804 (-)	438	Protein_3571	agmatinase	-
IAU66_RS18240	-	3704966..3706393 (-)	1428	WP_046341451.1	DUF885 family protein	-
IAU66_RS18245	-	3706394..3707734 (-)	1341	WP_025853604.1	MATE family efflux transporter	-
IAU66_RS18250	-	3707731..3708786 (-)	1056	WP_046341452.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

Download Length: 381 a.a. Molecular weight: 45768.27 Da Isoelectric Point: 5.0694

                                >NTDB_id=481105 IAU66_RS18225 WP_024085922.1 3702996..3704141(+) (rapF) [Bacillus amyloliquefaciens strain T-5]

MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR

LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS

MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE

AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI

NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

Download Length: 1146 bp

                                >NTDB_id=481105 IAU66_RS18225 WP_024085922.1 3702996..3704141(+) (rapF) [Bacillus amyloliquefaciens strain T-5]

GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC

GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT

CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA

CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG

GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG

TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG

ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT

ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT

TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG

GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT

ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG

AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA

AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA

TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG

TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533

Detailed information NTG0481105