Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IAU66_RS13560 Genome accession   NZ_CP061168
Coordinates   2789136..2789888 (-) Length   250 a.a.
NCBI ID   WP_003152643.1    Uniprot ID   A0A6A8LH02
Organism   Bacillus amyloliquefaciens strain T-5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2784136..2794888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS13535 mreC 2784572..2785435 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  IAU66_RS13540 mreB 2785466..2786479 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  IAU66_RS13545 radC 2786571..2787266 (-) 696 WP_003152646.1 DNA repair protein RadC -
  IAU66_RS13550 - 2787298..2787867 (-) 570 WP_014305513.1 nucleoside triphosphate pyrophosphatase -
  IAU66_RS13555 - 2788008..2789009 (-) 1002 WP_024085657.1 SPOR domain-containing protein -
  IAU66_RS13560 comC 2789136..2789888 (-) 753 WP_003152643.1 A24 family peptidase Machinery gene
  IAU66_RS13565 - 2790028..2791320 (-) 1293 WP_024085658.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IAU66_RS13570 - 2791379..2794021 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  IAU66_RS13575 - 2794474..2794665 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27152.80 Da        Isoelectric Point: 9.2521

>NTDB_id=481088 IAU66_RS13560 WP_003152643.1 2789136..2789888(-) (comC) [Bacillus amyloliquefaciens strain T-5]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=481088 IAU66_RS13560 WP_003152643.1 2789136..2789888(-) (comC) [Bacillus amyloliquefaciens strain T-5]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGAATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCTGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588