Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IAU66_RS12765 Genome accession   NZ_CP061168
Coordinates   2640714..2641481 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain T-5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2635714..2646481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS12745 - 2635916..2636728 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  IAU66_RS12750 ccpN 2636754..2637392 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  IAU66_RS12755 glyS 2637493..2639532 (-) 2040 WP_025852962.1 glycine--tRNA ligase subunit beta -
  IAU66_RS12760 glyQ 2639525..2640412 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  IAU66_RS12765 recO 2640714..2641481 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  IAU66_RS12770 - 2641518..2641661 (-) 144 WP_007408286.1 YqzL family protein -
  IAU66_RS12775 era 2641817..2642722 (-) 906 WP_003152978.1 GTPase Era -
  IAU66_RS12780 - 2642703..2643113 (-) 411 WP_003152976.1 cytidine deaminase -
  IAU66_RS12785 - 2643237..2643611 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  IAU66_RS12790 ybeY 2643592..2644065 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  IAU66_RS12795 - 2644066..2646198 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=481081 IAU66_RS12765 WP_003152982.1 2640714..2641481(-) (recO) [Bacillus amyloliquefaciens strain T-5]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=481081 IAU66_RS12765 WP_003152982.1 2640714..2641481(-) (recO) [Bacillus amyloliquefaciens strain T-5]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894