Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMBM01240355_RS06340 Genome accession   NC_017517
Coordinates   1198289..1200034 (-) Length   581 a.a.
NCBI ID   WP_014582019.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1193289..1205034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS06320 (NMBM01240355_1148) - 1193501..1193935 (+) 435 WP_002213509.1 hypothetical protein -
  NMBM01240355_RS06325 (NMBM01240355_1149) - 1193994..1194263 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  NMBM01240355_RS06330 (NMBM01240355_1150) lon 1194445..1196907 (-) 2463 WP_041423380.1 endopeptidase La -
  NMBM01240355_RS12840 - 1197007..1197183 (+) 177 WP_226893060.1 nitric oxide synthase -
  NMBM01240355_RS06335 (NMBM01240355_1151) - 1197158..1198261 (+) 1104 WP_002237001.1 class I SAM-dependent methyltransferase -
  NMBM01240355_RS06340 (NMBM01240355_1152) recD 1198289..1200034 (-) 1746 WP_014582019.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMBM01240355_RS06345 (NMBM01240355_1153) lolD 1200100..1200795 (-) 696 WP_014582020.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMBM01240355_RS06350 (NMBM01240355_1154) - 1200788..1202035 (-) 1248 WP_014582021.1 lipoprotein-releasing ABC transporter permease subunit -
  NMBM01240355_RS06355 (NMBM01240355_1155) - 1202240..1202518 (+) 279 WP_002220967.1 hypothetical protein -
  NMBM01240355_RS06360 (NMBM01240355_1156) recR 1202574..1203191 (-) 618 WP_002217147.1 recombination mediator RecR -
  NMBM01240355_RS06365 (NMBM01240355_1157) - 1203258..1204796 (-) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62765.41 Da        Isoelectric Point: 6.0378

>NTDB_id=48108 NMBM01240355_RS06340 WP_014582019.1 1198289..1200034(-) (recD) [Neisseria meningitidis M01-240355]
MERQTDEFAQAAARAAIWFLARYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYVGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKARQTALGSMLGRIFSQG

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=48108 NMBM01240355_RS06340 WP_014582019.1 1198289..1200034(-) (recD) [Neisseria meningitidis M01-240355]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCAGG
CAGCGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTAATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCCCCTACGGGTAAGGCTGCCGCGCATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACCGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCCGTGCTGTCCGTCTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATTTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCACACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGTGGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAGCGCGTCAGACGGCATTGGGCAGTATGCTTGGGCGGATATTTTCACAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.655

99.828

0.945

Multiple sequence alignment