Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IAU66_RS07540 Genome accession   NZ_CP061168
Coordinates   1465476..1465760 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain T-5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460476..1470760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS07520 - 1461723..1462631 (+) 909 WP_024085247.1 ketopantoate reductase family protein -
  IAU66_RS07525 - 1462661..1463893 (-) 1233 WP_024085248.1 aminopeptidase -
  IAU66_RS07530 - 1463994..1464128 (-) 135 WP_003154559.1 protein YkpC -
  IAU66_RS07535 mreBH 1464200..1465207 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  IAU66_RS07540 abrB 1465476..1465760 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IAU66_RS07545 - 1465933..1467237 (+) 1305 WP_014304932.1 ATP-binding protein -
  IAU66_RS07550 - 1467239..1468066 (+) 828 WP_024085250.1 gamma-glutamylcyclotransferase -
  IAU66_RS07555 ktrC 1468107..1468772 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  IAU66_RS07560 ade 1468921..1470654 (+) 1734 WP_024085251.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=481064 IAU66_RS07540 WP_024085249.1 1465476..1465760(+) (abrB) [Bacillus amyloliquefaciens strain T-5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=481064 IAU66_RS07540 WP_024085249.1 1465476..1465760(+) (abrB) [Bacillus amyloliquefaciens strain T-5]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543