Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IAU66_RS07325 Genome accession   NZ_CP061168
Coordinates   1429107..1429571 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain T-5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424107..1434571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS07305 - 1424587..1426407 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  IAU66_RS07310 - 1426383..1427602 (-) 1220 Protein_1398 aminotransferase A -
  IAU66_RS07315 - 1427803..1427964 (-) 162 WP_007409608.1 hypothetical protein -
  IAU66_RS07320 cheV 1428153..1429064 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  IAU66_RS07325 kre 1429107..1429571 (-) 465 WP_003154622.1 YkyB family protein Regulator
  IAU66_RS07330 - 1429694..1430986 (-) 1293 WP_024085236.1 MFS transporter -
  IAU66_RS07335 - 1431062..1431556 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  IAU66_RS07340 - 1431631..1432494 (-) 864 WP_024085238.1 metallophosphoesterase -
  IAU66_RS07345 fadH 1432638..1433402 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  IAU66_RS20050 - 1433512..1434057 (+) 546 Protein_1406 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=481062 IAU66_RS07325 WP_003154622.1 1429107..1429571(-) (kre) [Bacillus amyloliquefaciens strain T-5]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=481062 IAU66_RS07325 WP_003154622.1 1429107..1429571(-) (kre) [Bacillus amyloliquefaciens strain T-5]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929