Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IAU66_RS01785 Genome accession   NZ_CP061168
Coordinates   362030..362467 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain T-5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357030..367467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS19960 - 357610..357774 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  IAU66_RS01750 - 357888..359090 (+) 1203 WP_024084872.1 GTP-binding protein -
  IAU66_RS01755 - 359155..360291 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  IAU66_RS01760 - 360306..360740 (+) 435 WP_021494203.1 RDD family protein -
  IAU66_RS01765 - 360857..361132 (+) 276 WP_369719109.1 YckD family protein -
  IAU66_RS20250 - 361236..361319 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  IAU66_RS01775 - 361351..361569 (+) 219 Protein_311 family 1 glycosylhydrolase -
  IAU66_RS01780 nin/comJ 361610..362008 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  IAU66_RS01785 nucA/comI 362030..362467 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IAU66_RS01790 hxlB 362826..363383 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  IAU66_RS01795 hxlA 363380..364015 (-) 636 WP_024084873.1 3-hexulose-6-phosphate synthase -
  IAU66_RS01800 - 364247..364609 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=481042 IAU66_RS01785 WP_003156588.1 362030..362467(-) (nucA/comI) [Bacillus amyloliquefaciens strain T-5]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=481042 IAU66_RS01785 WP_003156588.1 362030..362467(-) (nucA/comI) [Bacillus amyloliquefaciens strain T-5]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641