Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IAU66_RS00250 Genome accession   NZ_CP061168
Coordinates   46041..46331 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain T-5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 41041..51331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS00210 darA 41058..41387 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  IAU66_RS00215 - 41400..41840 (+) 441 WP_004264730.1 YaaR family protein -
  IAU66_RS00220 holB 41852..42841 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  IAU66_RS00225 ricT 42844..43671 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  IAU66_RS00230 yabA 43686..44045 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  IAU66_RS00235 - 44106..44849 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IAU66_RS00240 - 44836..45135 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  IAU66_RS00245 rsmI 45110..45991 (+) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IAU66_RS00250 abrB 46041..46331 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  IAU66_RS00255 metG 46814..48805 (+) 1992 WP_004264704.1 methionine--tRNA ligase -
  IAU66_RS00260 - 48881..49648 (+) 768 WP_004264700.1 TatD family hydrolase -
  IAU66_RS00265 - 49783..51108 (+) 1326 WP_101312113.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=481037 IAU66_RS00250 WP_169510469.1 46041..46331(-) (abrB) [Bacillus amyloliquefaciens strain T-5]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=481037 IAU66_RS00250 WP_169510469.1 46041..46331(-) (abrB) [Bacillus amyloliquefaciens strain T-5]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979