Detailed information NTG0481035

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: J6M00_RS09210
• Genome accession: NZ_CP072188
• Coordinates: 1883205..1884377 (-)
• Length: 390 a.a.
• NCBI ID: WP_214244786.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain 20190121E1-3
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1878205..1889377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6M00_RS09190 (J6M00_09185)	-	1879537..1880814 (-)	1278	WP_214244784.1	thioredoxin family protein	-
J6M00_RS09195 (J6M00_09190)	-	1880877..1881152 (-)	276	WP_214244796.1	hypothetical protein	-
J6M00_RS09200 (J6M00_09195)	-	1881166..1883118 (-)	1953	WP_225908219.1	T9SS type A sorting domain-containing protein	-
J6M00_RS09210 (J6M00_09205)	clpX	1883205..1884377 (-)	1173	WP_214244786.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
J6M00_RS09215 (J6M00_09210)	-	1884415..1884801 (-)	387	WP_064971057.1	HIT family protein	-
J6M00_RS09220 (J6M00_09215)	greA	1884820..1885287 (-)	468	WP_064971058.1	transcription elongation factor GreA	-
J6M00_RS09225 (J6M00_09220)	-	1885389..1885853 (+)	465	WP_154138078.1	hypothetical protein	-
J6M00_RS09230 (J6M00_09225)	dtd	1885859..1886305 (+)	447	WP_214244788.1	D-aminoacyl-tRNA deacylase	-
J6M00_RS09235 (J6M00_09230)	sppA	1886388..1888142 (-)	1755	WP_214244790.1	signal peptide peptidase SppA	-
J6M00_RS09240 (J6M00_09235)	folK	1888164..1888589 (+)	426	WP_064971165.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43843.38 Da
• Isoelectric Point: 5.5740

>NTDB_id=481035 J6M00_RS09210 WP_214244786.1 1883205..1884377(-) (clpX) [Riemerella anatipestifer strain 20190121E1-3]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPVNNLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIESRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKETMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide

• Length: 1173 bp

>NTDB_id=481035 J6M00_RS09210 WP_214244786.1 1883205..1884377(-) (clpX) [Riemerella anatipestifer strain 20190121E1-3]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGCTAGTTTCGGGACAGAATGGACTCAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAATTTTCTCCTGTAAACAACC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACTCTTCAACAAAAAAAGACAATGATGTTGAAATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCGAAAACCATTGCAAGAGAACTTAATGTCC
CTTTTTGTATTGTAGACGCTACTATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGGAA
ATCAGACAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAGCAAGGATTATTAAAATTATTAGAAGGAAGCA
TCGTAAATGTACCGCCTCAAGGAGGAAGAAAACATCCTGACCAAAAATACATACAGGTAAACACTCAGAACATTTTATTT
ATTGCAGGAGGGGCTTTTGATGGTATAAAAGAGATTATAGAAAGTAGACTAAACAAACAAGCCATAGGATTCAGCAAAGA
AAAATTAGACTCCGAAAAAGATTTGGCACAAATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAGAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAAAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (5-40)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (309-378)

• AAA domain (Cdc48 subfamily) (AAA_2) (106-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	52.785	96.667	0.51
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.451	97.179	0.5