Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J6M00_RS04775 Genome accession   NZ_CP072188
Coordinates   968255..969604 (+) Length   449 a.a.
NCBI ID   WP_185147560.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190121E1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 963255..974604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M00_RS04760 (J6M00_04760) - 964944..966338 (+) 1395 WP_109475230.1 DUF5689 domain-containing protein -
  J6M00_RS04765 (J6M00_04765) - 966428..967363 (+) 936 WP_064970613.1 nitronate monooxygenase family protein -
  J6M00_RS04770 (J6M00_04770) - 967398..968162 (-) 765 WP_064970611.1 enoyl-CoA hydratase/isomerase family protein -
  J6M00_RS04775 (J6M00_04775) radA 968255..969604 (+) 1350 WP_185147560.1 DNA repair protein RadA Machinery gene
  J6M00_RS04780 (J6M00_04780) - 969651..971294 (+) 1644 WP_064970607.1 Ig-like domain-containing protein -
  J6M00_RS04785 (J6M00_04785) - 971306..971770 (+) 465 WP_064970605.1 heme-binding domain-containing protein -
  J6M00_RS04790 (J6M00_04790) - 971810..972658 (-) 849 WP_153928738.1 GLPGLI family protein -
  J6M00_RS04795 (J6M00_04795) - 972731..973003 (-) 273 WP_153928739.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49694.22 Da        Isoelectric Point: 7.4843

>NTDB_id=481017 J6M00_RS04775 WP_185147560.1 968255..969604(+) (radA) [Riemerella anatipestifer strain 20190121E1-3]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPIFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDIAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHNIKIVEVSKIEDFHEEIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=481017 J6M00_RS04775 WP_185147560.1 968255..969604(+) (radA) [Riemerella anatipestifer strain 20190121E1-3]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCACAACATTCCAAATGGCACGGGCAATGCCAAAATTG
TGGACAATGGAATACCTTAGTGGAAGAGATTGCAGAAAAAACAACCTCTAAAAATTATGCAGGAGATTTTGGAAGGCAAC
ACCTCATCAATATCATAGAAGTAGAAACACAAGCTGAACAACGCATTAAAACTCCAAGCGAAGAACTTAACAGAGTTTTG
GGTGGCGGTATTGTTTTAGGTTCGGTAACTCTTATCGGAGGCGAACCAGGTATAGGGAAATCTACATTACTGTTGCAATT
AGCCCTTAAAATGAAGAAAAAAATCCTCTATGTTTCTGGGGAAGAAAGTGCCTCTCAAATCAAAATGAGAGCAGATAGAT
TAACGGAACTCCAAAATCCGAATTGTTTTTTATACACTGAAACTTCAATAGAGAAAATCTTACACGAAGCCAAAAAACTT
CAGCCCGATTTTATGATTGTGGACTCTATACAAACCTTACATTCGCAGGTGATGGAGAGTTCCCCAGGTACAGTGTCTCA
GATTAGAGAATGTGCTTCGGAAGTTATAAAATTTGCAAAAGCGACTAACACGCCTATTTTTTTAGTGGGACATATTACTA
AAGATGGACAAATAGCGGGACCAAAAGTGTTGGAGCATATGGTAGATGTAGTTCTTAATTTTGATGGTGATAGAAACCAC
TTATTTAGACTTTTAAGAGCAAATAAAAATCGTTTTGGTTCTACTGCGGAGATTGGTATTTATGAGATGATTTCAGCAGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACCAAAAAATCCGAAGAGTTTTCAGGTAATGCGGTGGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTCGTAAGTACAGCGGTGTATGGTACACCACAGAGAAGT
TCTACGGGTTTTGATGCTAAAAGGCTCAATATGCTTTTGGCGGTTTTGGAGAAACGTTCTGGCTTTCAACTTGGGGCTAA
AGATGTATTTTTAAATATTACTGGAGGTATTAAAACGGACGACCCCGCTCTAGATTTGGCTGTAGTTGCCGCTATCTTAT
CTTCCAACGAGGATATTGCAGTATCGGAGCATTATTGTTTTGCTGGGGAAATTGGTCTTAGTGGAGAAATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAATTAGGCTATCATAAGATATTTGTTTCTAAACAAAATAAAATACC
AAAGAAAAAACACAATATAAAAATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAAATATTTTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(63-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.588

100

0.483
  radA Streptococcus pneumoniae Rx1

47.588

100

0.483
  radA Streptococcus pneumoniae D39

47.588

100

0.483
  radA Streptococcus pneumoniae TIGR4

47.588

100

0.483
  radA Streptococcus mitis NCTC 12261

47.692

100

0.483
  radA Streptococcus mitis SK321

47.461

100

0.479
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.843

96.214

0.47