Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   J6M00_RS03060 Genome accession   NZ_CP072188
Coordinates   596600..599365 (-) Length   921 a.a.
NCBI ID   WP_004917760.1    Uniprot ID   E4TE29
Organism   Riemerella anatipestifer strain 20190121E1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591600..604365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M00_RS03040 (J6M00_03040) - 592077..592793 (+) 717 WP_004917766.1 DUF3822 family protein -
  J6M00_RS03045 (J6M00_03045) - 592819..593379 (+) 561 WP_004917764.1 RsmD family RNA methyltransferase -
  J6M00_RS03050 (J6M00_03050) kdsA 593528..594337 (+) 810 WP_004917762.1 3-deoxy-8-phosphooctulonate synthase -
  J6M00_RS03055 (J6M00_03055) - 594364..596541 (+) 2178 WP_004917761.1 TonB-dependent siderophore receptor -
  J6M00_RS03060 (J6M00_03060) uvrA 596600..599365 (-) 2766 WP_004917760.1 excinuclease ABC subunit UvrA Machinery gene
  J6M00_RS03065 (J6M00_03065) eptA 599413..600936 (-) 1524 WP_004917757.1 phosphoethanolamine--lipid A transferase EptA -
  J6M00_RS03070 (J6M00_03070) - 600923..601750 (-) 828 WP_214244658.1 phosphatase PAP2 family protein -
  J6M00_RS03075 (J6M00_03075) - 601799..602419 (-) 621 WP_064970277.1 trimeric intracellular cation channel family protein -
  J6M00_RS03080 (J6M00_03080) coaD 602451..602909 (-) 459 WP_004919697.1 pantetheine-phosphate adenylyltransferase -
  J6M00_RS03085 (J6M00_03085) - 602916..603899 (-) 984 WP_214244660.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 921 a.a.        Molecular weight: 103381.49 Da        Isoelectric Point: 6.1758

>NTDB_id=481008 J6M00_RS03060 WP_004917760.1 596600..599365(-) (uvrA) [Riemerella anatipestifer strain 20190121E1-3]
MNIKNNIFVKNAHLNNLKNIDVLIPKNKLVVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSSYARQFLGRLEKPKIDDIK
GLAPSIAIQQKVISSNPRSTVGTSTEIYDYLKLLFARVGRTYSPVSGDEVKKDSISDVISYIEENPNQEFLLTAPLSFAD
GDFKSLLNTLKVSGFTRLEINGNIAEIEDLESFGFVPEKEMSLNLVIDRFVYEDDEYFLQRLADSIQTAFYEGHGSCALK
NIETQKIKHFSNLFEADGISFLEPNLHFFSFNNPYGACPTCEGYGKVVGIDEDLVIPNKRLSVYEDAVACWKGETMSEWK
MHFIKNAPDFPIHKPYFELTKEQKQLLWRGTGAKNFPCIDQFFRMLEENLYKIQYRVMLSRYRGKTKCPDCEGLRLRKET
EWVKVGGHNIQSLMELPLDELLPLIKNLKLTKHEQEIAKRLLYEITTRLEFLLKVGLGYLTLNRTSNTLSGGESQRINLA
TSLGSSLVGSIYILDEPSIGLHSQDTENLIEVLKNLRDLGNTVIVVEHDEDIMRAADYIIDIGPEAGFLGGELVFAGDFK
DLKEADTLTSKYLTGRLEIAVPKRRRRAKSFINIKGARQNNLKNIDVDIPLENLVVVTGVSGSGKSTLMKEVLANDIQIQ
LGMGGKKADYDYVEFPPQLVKHIELIDQNPIGKSSRSNPVTYLKAYDDIRDLFAKQRHSKTMNLKPKHFSFNVDGGRCDE
CKGEGIITISMQFMADVELECEHCKGARFKSEILEVKFDEKNIADILQMTVDEAIDFFSDNKQDKIVTKLKPLQEVGLGY
LKLGQSSSTLSGGEAQRVKLASFLVKGVTTEKTLFIFDEPSTGLHFHDIQKLLTSLQALIELGHSVVVIEHQPDIIKSAD
WIIDIGPNAGKYGGEVVFAGTPEDLAKDKKSKTAKFVAEKL

Nucleotide


Download         Length: 2766 bp        

>NTDB_id=481008 J6M00_RS03060 WP_004917760.1 596600..599365(-) (uvrA) [Riemerella anatipestifer strain 20190121E1-3]
ATGAATATTAAAAATAATATTTTTGTTAAAAACGCACATCTTAACAACCTTAAAAATATAGATGTTCTCATACCTAAAAA
CAAACTAGTGGTAGTAACTGGCGTGTCTGGTAGTGGGAAATCGTCTTTAGCCTTTGATACTATTTATGCCGAAGGGCAGA
GGCGTTATGTGGAGAGTTTAAGCTCTTATGCTAGGCAGTTTTTGGGACGATTGGAAAAGCCAAAGATAGACGATATTAAA
GGTTTAGCACCATCTATCGCCATACAACAGAAAGTAATTTCTTCTAATCCAAGGTCCACAGTAGGAACTTCCACCGAAAT
TTACGATTATCTTAAATTATTGTTTGCTCGTGTGGGGCGTACCTATTCACCTGTGTCTGGTGATGAGGTGAAAAAGGACA
GCATTTCTGATGTCATTTCTTATATAGAAGAAAATCCTAATCAAGAGTTTCTACTCACAGCACCGCTTTCTTTTGCTGAT
GGTGATTTTAAATCATTGTTAAATACATTGAAAGTTTCAGGATTTACTAGATTGGAAATTAACGGAAATATCGCTGAAAT
AGAAGATTTAGAGAGTTTCGGCTTCGTTCCTGAAAAAGAGATGTCGCTTAATTTGGTTATTGACCGCTTTGTTTACGAGG
ACGATGAGTATTTTCTGCAACGCTTAGCAGATTCTATCCAAACAGCTTTTTACGAAGGGCACGGCTCTTGTGCTTTAAAA
AATATTGAAACACAAAAAATAAAACATTTTTCTAACCTTTTTGAAGCTGATGGTATTTCTTTTTTAGAACCAAATCTTCA
TTTTTTCAGTTTTAATAATCCTTACGGAGCGTGTCCTACTTGTGAGGGTTATGGTAAAGTGGTTGGGATAGATGAAGACT
TAGTAATTCCTAATAAAAGGCTTTCGGTTTACGAAGATGCCGTCGCTTGTTGGAAAGGAGAAACGATGAGCGAGTGGAAA
ATGCATTTTATCAAAAACGCTCCAGATTTTCCAATCCATAAACCCTATTTTGAACTTACTAAAGAGCAAAAACAACTCTT
ATGGAGAGGAACAGGAGCTAAAAATTTCCCTTGTATAGACCAGTTTTTCCGTATGCTGGAGGAGAATTTGTATAAGATAC
AATACCGAGTGATGCTTTCTCGTTACAGGGGTAAAACCAAATGTCCCGACTGCGAAGGTCTAAGATTAAGAAAAGAAACC
GAATGGGTAAAAGTGGGAGGGCATAACATACAATCGTTAATGGAATTACCATTAGACGAACTTCTGCCTTTAATTAAGAA
TCTTAAACTTACCAAACACGAGCAAGAAATTGCTAAAAGGCTACTCTACGAAATTACTACTAGACTAGAGTTTTTGTTAA
AAGTAGGCTTGGGATATTTAACGTTGAACCGTACTTCTAATACTTTGTCAGGTGGAGAAAGTCAAAGGATTAACTTAGCG
ACTAGCTTGGGGAGTTCTTTGGTTGGGTCTATTTATATTTTGGACGAGCCTTCCATTGGGCTACATTCACAGGATACCGA
GAATTTAATAGAAGTTCTAAAGAATTTAAGAGATTTAGGTAATACCGTTATTGTTGTGGAACACGATGAGGATATTATGC
GTGCCGCAGATTATATTATAGATATAGGTCCAGAAGCCGGTTTCCTTGGGGGAGAGCTGGTCTTCGCAGGCGATTTTAAA
GACCTCAAAGAAGCCGATACTTTAACTTCTAAATACCTTACAGGAAGGCTAGAAATAGCAGTGCCAAAAAGGAGAAGGAG
AGCTAAATCGTTCATCAATATCAAAGGAGCAAGACAAAATAACCTTAAAAATATAGATGTTGATATTCCTTTGGAGAATT
TGGTGGTGGTTACGGGAGTGTCGGGCTCTGGTAAATCTACATTGATGAAAGAGGTTTTGGCTAACGATATTCAAATCCAG
TTAGGAATGGGAGGCAAAAAAGCCGACTACGATTATGTGGAATTTCCGCCTCAACTTGTGAAGCATATAGAGCTGATAGA
TCAAAATCCTATCGGAAAATCGTCTAGGTCTAATCCTGTAACCTATCTTAAGGCTTATGATGATATTAGAGATTTGTTCG
CTAAGCAGCGTCATTCTAAAACTATGAATTTGAAGCCTAAGCACTTTTCGTTTAATGTAGATGGTGGGAGATGTGATGAG
TGTAAAGGTGAGGGTATTATTACCATATCTATGCAGTTTATGGCAGATGTGGAACTAGAGTGTGAGCACTGTAAAGGTGC
AAGATTTAAGTCCGAAATATTGGAAGTTAAATTTGATGAGAAAAACATTGCAGATATTCTACAAATGACGGTAGATGAAG
CGATTGATTTCTTTAGTGATAATAAACAAGATAAAATAGTTACGAAACTAAAACCATTGCAAGAGGTAGGTTTAGGCTAT
CTTAAACTAGGGCAAAGTTCTTCTACGCTTTCGGGTGGGGAAGCTCAAAGGGTAAAGTTGGCTTCATTTTTAGTGAAGGG
CGTAACTACGGAGAAAACGCTTTTCATCTTTGATGAACCTTCCACAGGGCTTCATTTTCACGATATACAGAAATTATTAA
CCTCATTACAGGCACTTATAGAGCTGGGGCATTCTGTAGTAGTTATAGAGCATCAGCCAGATATTATTAAGTCAGCAGAT
TGGATCATAGATATAGGTCCTAACGCAGGTAAGTATGGTGGAGAAGTGGTTTTTGCTGGAACACCTGAGGATTTAGCAAA
AGATAAAAAATCCAAAACTGCTAAATTCGTAGCCGAAAAACTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(602-841)

UvrA interaction domain (UvrA_inter)

(135-240)

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TE29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

44.271

100

0.461
  uvrA Streptococcus pneumoniae TIGR4

44.271

100

0.461
  uvrA Streptococcus pneumoniae D39

44.271

100

0.461