Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   NMBM01240355_RS03800 Genome accession   NC_017517
Coordinates   748020..749018 (-) Length   332 a.a.
NCBI ID   WP_002229200.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 743020..754018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS03780 (NMBM01240355_0687) - 744502..745128 (-) 627 WP_002232004.1 phosphoribosylanthranilate isomerase -
  NMBM01240355_RS03785 (NMBM01240355_0688) greB 745187..745678 (-) 492 WP_002214159.1 transcription elongation factor GreB -
  NMBM01240355_RS03790 (NMBM01240355_0689) purF 745778..747322 (-) 1545 WP_014581866.1 amidophosphoribosyltransferase -
  NMBM01240355_RS03795 (NMBM01240355_0690) - 747530..748027 (-) 498 WP_002229197.1 CvpA family protein -
  NMBM01240355_RS03800 (NMBM01240355_0691) tpc 748020..749018 (-) 999 WP_002229200.1 cell division protein FtsN Machinery gene
  NMBM01240355_RS03805 (NMBM01240355_0692) folC 749031..750305 (-) 1275 WP_014581867.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  NMBM01240355_RS03810 (NMBM01240355_0693) - 750336..750782 (-) 447 WP_002214149.1 protein YgfX -
  NMBM01240355_RS03815 (NMBM01240355_0694) - 750787..751146 (-) 360 WP_002214147.1 hypothetical protein -
  NMBM01240355_RS03820 (NMBM01240355_0695) - 751219..751947 (-) 729 WP_002233691.1 amino acid ABC transporter ATP-binding protein -
  NMBM01240355_RS03830 (NMBM01240355_0696) rsmA 752120..752899 (-) 780 WP_014581868.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  NMBM01240355_RS03835 (NMBM01240355_0697) - 753111..753800 (+) 690 WP_002251195.1 DNA glycosylase -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35576.96 Da        Isoelectric Point: 10.1851

>NTDB_id=48097 NMBM01240355_RS03800 WP_002229200.1 748020..749018(-) (tpc) [Neisseria meningitidis M01-240355]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESRKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAVGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=48097 NMBM01240355_RS03800 WP_002229200.1 748020..749018(-) (tpc) [Neisseria meningitidis M01-240355]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAGAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGTGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGTGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.306

100

0.931


Multiple sequence alignment