Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   IB936_RS01325 Genome accession   NZ_CP061133
Coordinates   256149..257219 (+) Length   356 a.a.
NCBI ID   WP_187830502.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 251149..262219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB936_RS01310 (IB936_01310) amiA 251668..253647 (+) 1980 WP_021299351.1 peptide ABC transporter substrate-binding protein Regulator
  IB936_RS01315 (IB936_01315) amiC 253712..255214 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  IB936_RS01320 (IB936_01320) amiD 255214..256140 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  IB936_RS01325 (IB936_01325) amiE 256149..257219 (+) 1071 WP_187830502.1 ABC transporter ATP-binding protein Regulator
  IB936_RS01330 (IB936_01330) amiF 257212..258135 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  IB936_RS09440 (IB936_01335) - 258173..258256 (-) 84 Protein_230 IS3 family transposase -
  IB936_RS09445 - 258390..258709 (-) 320 Protein_231 IS3 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39731.83 Da        Isoelectric Point: 5.8975

>NTDB_id=480915 IB936_RS01325 WP_187830502.1 256149..257219(+) (amiE) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHRKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=480915 IB936_RS01325 WP_187830502.1 256149..257219(+) (amiE) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATTGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCGAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.667

100

0.775
  amiE Streptococcus thermophilus LMG 18311

75.556

100

0.764
  amiE Streptococcus thermophilus LMD-9

75.556

100

0.764
  oppD Streptococcus mutans UA159

55.493

99.719

0.553