Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   J5X95_RS17805 Genome accession   NZ_CP072120
Coordinates   3526558..3528432 (+) Length   624 a.a.
NCBI ID   WP_025284750.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3521558..3533432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS17790 (J5X95_17790) ymcA 3522609..3523040 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  J5X95_RS17795 (J5X95_17795) cotE 3523293..3523838 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  J5X95_RS17800 (J5X95_17800) hexA 3523957..3526542 (+) 2586 WP_094031921.1 DNA mismatch repair protein MutS Machinery gene
  J5X95_RS17805 (J5X95_17805) hexB 3526558..3528432 (+) 1875 WP_025284750.1 DNA mismatch repair endonuclease MutL Machinery gene
  J5X95_RS17810 (J5X95_17810) - 3528820..3529029 (-) 210 WP_094031716.1 hypothetical protein -
  J5X95_RS17815 (J5X95_17815) - 3530001..3530678 (+) 678 WP_012117588.1 MBL fold metallo-hydrolase -
  J5X95_RS17820 (J5X95_17820) fabD 3530993..3531862 (+) 870 WP_069007012.1 ACP S-malonyltransferase -
  J5X95_RS17825 (J5X95_17825) - 3531999..3532973 (+) 975 WP_094031717.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70010.26 Da        Isoelectric Point: 6.0941

>NTDB_id=480824 J5X95_RS17805 WP_025284750.1 3526558..3528432(+) (hexB) [Bacillus amyloliquefaciens strain GKT04]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIIEEEILPNEADH
GVPPEIGMPETAAPVSDTPEPEAVAEEIREGRVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVE
PEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKL
REEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=480824 J5X95_RS17805 WP_025284750.1 3526558..3528432(+) (hexB) [Bacillus amyloliquefaciens strain GKT04]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCAAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGTATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAGC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCGATCCG
TCTCCGCCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGATGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TTGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCGCCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CAATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGGTAATAATAGAAGAAGAGATCCTCCCGAATGAAGCGGATCAC
GGAGTGCCGCCGGAGATCGGTATGCCCGAAACGGCAGCGCCTGTTTCCGATACTCCGGAACCGGAAGCTGTCGCTGAAGA
AATACGGGAGGGAAGGGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAAACG
GCTTGTATATCATTGACCAGCATGCGGCACAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTCGAG
CCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTACGCGGCAAATGAAGCGCTGATCATTGACCAGCATCAGCA
TGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACCAACAGCTACATCGTTCGCTGCCATCCGGCCTGGTTTC
CAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAGCTG
CGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGCGAAACGACGAAATCAAAGC
GCTCTTGGACGATCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGCACGT
ATGAGATGGAGAAGATGTTTAAACGTGTGATGTAA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(439-580)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.047

100

0.476