Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   J5X95_RS14315 Genome accession   NZ_CP072120
Coordinates   2807952..2810834 (+) Length   960 a.a.
NCBI ID   WP_219371591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2802952..2815834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS14290 (J5X95_14290) - 2803390..2804157 (+) 768 WP_032871096.1 enoyl-CoA hydratase -
  J5X95_RS14295 (J5X95_14295) - 2804182..2804367 (-) 186 WP_015239502.1 YhzD family protein -
  J5X95_RS14300 (J5X95_14300) - 2804473..2805369 (+) 897 WP_007409231.1 ABC transporter ATP-binding protein -
  J5X95_RS14305 (J5X95_14305) - 2805362..2806621 (+) 1260 WP_061046927.1 ABC transporter permease -
  J5X95_RS14310 (J5X95_14310) - 2806732..2807955 (+) 1224 WP_219371589.1 metallophosphoesterase family protein -
  J5X95_RS14315 (J5X95_14315) sbcE 2807952..2810834 (+) 2883 WP_219371591.1 ATP-binding protein Machinery gene
  J5X95_RS14320 (J5X95_14320) yhaM 2810908..2811852 (+) 945 WP_003155251.1 3'-5' exoribonuclease YhaM -
  J5X95_RS14325 (J5X95_14325) - 2811967..2812194 (+) 228 WP_012117207.1 sporulation YhaL family protein -
  J5X95_RS14330 (J5X95_14330) - 2812315..2813465 (+) 1151 WP_094031497.1 IS3 family transposase -
  J5X95_RS14335 (J5X95_14335) - 2813523..2814374 (-) 852 WP_015239508.1 peptidylprolyl isomerase -
  J5X95_RS14340 (J5X95_14340) yhzE1 2814533..2814619 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  J5X95_RS14345 (J5X95_14345) yhzE2 2814744..2814830 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  J5X95_RS14350 (J5X95_14350) - 2814887..2815105 (-) 219 WP_003155245.1 hypothetical protein -
  J5X95_RS14355 (J5X95_14355) - 2815166..2815696 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109617.64 Da        Isoelectric Point: 7.4855

>NTDB_id=480784 J5X95_RS14315 WP_219371591.1 2807952..2810834(+) (sbcE) [Bacillus amyloliquefaciens strain GKT04]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSMLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPEALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKSAELRRQADLLAPNEDLLQKERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHAVTAENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQHLEKQRAKQKKLFLGAGILFIAIFAMSKEWL
PAALFTGALLLYMLSGMQKPLPSERGGPGHKKKKPAISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRLY
EEWEAEMAPSEKQAELFMNELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLHVLLAQAERAREEAKRKQALEMDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLTESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREQTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYHKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRQRLQRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=480784 J5X95_RS14315 WP_219371591.1 2807952..2810834(+) (sbcE) [Bacillus amyloliquefaciens strain GKT04]
ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGATTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCATGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGGCGATCACGGCGCTGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTCTCCGATACAGACCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGACTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCAGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGAAGCATTGAAGCAATTCCCGAAGGA
CGGAATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGTCTTGAGGGGCTTCGGGCAAAATCGG
CTGAACTCAGGCGGCAGGCTGATCTGCTCGCTCCAAATGAGGACTTGCTGCAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCGCGCGGCGAACAGCTTGCAGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTCGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAGGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCGTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTTCAGCATCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCGATTTTCGCTATGTCAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGTGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAACCGCTGCCGTCAGAAAGAGGAGG
GCCCGGACACAAGAAAAAGAAGCCGGCGATCTCTAAAGAAGCGGCTGATCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCTATAT
GAAGAATGGGAGGCCGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAACGAACTGGGGTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTAATGAAAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAG
CGGGCAGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCACGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAT
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAACCGCGAACACTTTTGTGAACTCGCCAGGCTGACTGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTGGAGCCGTACATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCCCAGCTCCGTGAGCAAACCG
CTTTATTAACGGTGAAGCAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATTATCAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGGCCGCTTACGGACGGACGCTATCACAAAT
TGTATTTTTCCGAGGCTGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCTGCTGGCGAACTGTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATTCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTGCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGACAGCGGCTGCAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

57.158

100

0.574