Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   J5X95_RS11440 Genome accession   NZ_CP072120
Coordinates   2253040..2253474 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2248040..2258474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS11410 (J5X95_11410) - 2248714..2249574 (+) 861 WP_020955337.1 SDR family oxidoreductase -
  J5X95_RS11415 (J5X95_11415) - 2249587..2250090 (+) 504 WP_025284250.1 D-lyxose/D-mannose family sugar isomerase -
  J5X95_RS11420 (J5X95_11420) - 2250177..2250800 (+) 624 WP_094031510.1 GNAT family N-acetyltransferase -
  J5X95_RS11425 (J5X95_11425) - 2250807..2251229 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  J5X95_RS11430 (J5X95_11430) - 2251727..2252536 (+) 810 WP_012116831.1 lipid II flippase Amj family protein -
  J5X95_RS11435 (J5X95_11435) - 2252574..2252864 (-) 291 WP_007410179.1 DUF3817 domain-containing protein -
  J5X95_RS11440 (J5X95_11440) lrpC 2253040..2253474 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  J5X95_RS11445 (J5X95_11445) - 2253538..2255724 (+) 2187 WP_094031909.1 DNA topoisomerase III -
  J5X95_RS11450 (J5X95_11450) - 2255958..2257043 (+) 1086 WP_039062633.1 hypothetical protein -
  J5X95_RS11455 (J5X95_11455) - 2257024..2257872 (+) 849 WP_033575066.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=480772 J5X95_RS11440 WP_007410180.1 2253040..2253474(+) (lrpC) [Bacillus amyloliquefaciens strain GKT04]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=480772 J5X95_RS11440 WP_007410180.1 2253040..2253474(+) (lrpC) [Bacillus amyloliquefaciens strain GKT04]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCTCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCTGTTTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTTAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792