Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   J5X95_RS08845 Genome accession   NZ_CP072120
Coordinates   1743083..1743877 (-) Length   264 a.a.
NCBI ID   WP_007407895.1    Uniprot ID   A7ZAN9
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738083..1748877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS08825 (J5X95_08825) - 1738391..1739812 (-) 1422 WP_094031428.1 sensor histidine kinase -
  J5X95_RS08830 (J5X95_08830) - 1739809..1740018 (-) 210 WP_094031429.1 winged helix-turn-helix domain-containing protein -
  J5X95_RS08840 (J5X95_08840) htrA 1741800..1742996 (-) 1197 WP_219371670.1 S1C family serine protease Regulator
  J5X95_RS08845 (J5X95_08845) vicX 1743083..1743877 (-) 795 WP_007407895.1 MBL fold metallo-hydrolase Regulator
  J5X95_RS08850 (J5X95_08850) - 1743892..1744731 (-) 840 WP_039063871.1 two-component system regulatory protein YycI -
  J5X95_RS08855 (J5X95_08855) yycH 1744718..1746076 (-) 1359 WP_032868124.1 two-component system activity regulator YycH -
  J5X95_RS08860 (J5X95_08860) walK 1746066..1747901 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  J5X95_RS08865 (J5X95_08865) walR 1747908..1748615 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.20 Da        Isoelectric Point: 6.0280

>NTDB_id=480746 J5X95_RS08845 WP_007407895.1 1743083..1743877(-) (vicX) [Bacillus amyloliquefaciens strain GKT04]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEKIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=480746 J5X95_RS08845 WP_007407895.1 1743083..1743877(-) (vicX) [Bacillus amyloliquefaciens strain GKT04]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAAAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTCTGTTCCCGATGGAAAG
CGTAAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCACTGATGACGGACACAGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCCAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZAN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527