Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | J5X95_RS01620 | Genome accession | NZ_CP072120 |
| Coordinates | 326855..327169 (-) | Length | 104 a.a. |
| NCBI ID | WP_012117982.1 | Uniprot ID | A7Z6N6 |
| Organism | Bacillus amyloliquefaciens strain GKT04 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 321855..332169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5X95_RS01575 (J5X95_01575) | sinI | 322537..322710 (+) | 174 | WP_003153105.1 | anti-repressor SinI | Regulator |
| J5X95_RS01580 (J5X95_01580) | sinR | 322744..323079 (+) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| J5X95_RS01585 (J5X95_01585) | tasA | 323127..323912 (-) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| J5X95_RS01590 (J5X95_01590) | sipW | 323977..324561 (-) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| J5X95_RS01595 (J5X95_01595) | tapA | 324533..325204 (-) | 672 | WP_124934997.1 | amyloid fiber anchoring/assembly protein TapA | - |
| J5X95_RS01600 (J5X95_01600) | - | 325463..325792 (+) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| J5X95_RS01605 (J5X95_01605) | - | 325832..326011 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| J5X95_RS01610 (J5X95_01610) | comGG | 326068..326445 (-) | 378 | WP_012117980.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| J5X95_RS01615 (J5X95_01615) | comGF | 326446..326946 (-) | 501 | WP_257899725.1 | competence type IV pilus minor pilin ComGF | - |
| J5X95_RS01620 (J5X95_01620) | comGE | 326855..327169 (-) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| J5X95_RS01625 (J5X95_01625) | comGD | 327153..327590 (-) | 438 | WP_043020787.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| J5X95_RS01630 (J5X95_01630) | comGC | 327580..327888 (-) | 309 | WP_003153087.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| J5X95_RS01635 (J5X95_01635) | comGB | 327893..328930 (-) | 1038 | WP_094031834.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| J5X95_RS01640 (J5X95_01640) | comGA | 328917..329987 (-) | 1071 | WP_012117985.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| J5X95_RS01645 (J5X95_01645) | - | 330179..331129 (-) | 951 | WP_015417820.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11904.90 Da Isoelectric Point: 6.9470
>NTDB_id=480692 J5X95_RS01620 WP_012117982.1 326855..327169(-) (comGE) [Bacillus amyloliquefaciens strain GKT04]
MLNGNKGFSTIETLSAMAIWLFLMTSIIPVWTGMLTDGLKIEDRQEAYQLLQKHISTYMMTGKKPPSPGVKWKEDGEYYK
VCTADRSEKEMCLSILKTDWLYAS
MLNGNKGFSTIETLSAMAIWLFLMTSIIPVWTGMLTDGLKIEDRQEAYQLLQKHISTYMMTGKKPPSPGVKWKEDGEYYK
VCTADRSEKEMCLSILKTDWLYAS
Nucleotide
Download Length: 315 bp
>NTDB_id=480692 J5X95_RS01620 WP_012117982.1 326855..327169(-) (comGE) [Bacillus amyloliquefaciens strain GKT04]
ATGCTAAACGGAAATAAGGGGTTCTCTACTATTGAAACACTATCAGCAATGGCCATTTGGCTGTTCCTTATGACGTCTAT
CATTCCGGTCTGGACGGGCATGCTGACAGATGGTCTGAAAATAGAAGATCGCCAGGAAGCGTACCAGCTTCTTCAGAAAC
ATATCAGCACTTATATGATGACCGGAAAAAAGCCGCCGTCTCCCGGTGTGAAGTGGAAGGAGGATGGTGAGTATTACAAA
GTGTGTACGGCTGACCGCAGCGAAAAAGAAATGTGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAA
ATGCTAAACGGAAATAAGGGGTTCTCTACTATTGAAACACTATCAGCAATGGCCATTTGGCTGTTCCTTATGACGTCTAT
CATTCCGGTCTGGACGGGCATGCTGACAGATGGTCTGAAAATAGAAGATCGCCAGGAAGCGTACCAGCTTCTTCAGAAAC
ATATCAGCACTTATATGATGACCGGAAAAAAGCCGCCGTCTCCCGGTGTGAAGTGGAAGGAGGATGGTGAGTATTACAAA
GTGTGTACGGCTGACCGCAGCGAAAAAGAAATGTGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Bacillus subtilis subsp. subtilis str. 168 |
42.609 |
100 |
0.471 |