Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IAR44_RS08190 Genome accession   NZ_CP061087
Coordinates   1653388..1654287 (+) Length   299 a.a.
NCBI ID   WP_060675464.1    Uniprot ID   -
Organism   Bacillus velezensis strain CLA178     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1648388..1659287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR44_RS08170 (IAR44_08170) - 1649078..1650781 (+) 1704 WP_060675463.1 hypothetical protein -
  IAR44_RS08175 (IAR44_08175) - 1650778..1651059 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  IAR44_RS08180 (IAR44_08180) sucC 1651234..1652391 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  IAR44_RS08185 (IAR44_08185) sucD 1652420..1653322 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  IAR44_RS08190 (IAR44_08190) dprA 1653388..1654287 (+) 900 WP_060675464.1 DNA-processing protein DprA Machinery gene
  IAR44_RS08195 (IAR44_08195) topA 1654469..1656544 (+) 2076 WP_060675465.1 type I DNA topoisomerase -
  IAR44_RS08200 (IAR44_08200) trmFO 1656609..1657916 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IAR44_RS08205 (IAR44_08205) xerC 1657986..1658903 (+) 918 WP_039251511.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32864.07 Da        Isoelectric Point: 8.4593

>NTDB_id=480543 IAR44_RS08190 WP_060675464.1 1653388..1654287(+) (dprA) [Bacillus velezensis strain CLA178]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRKNLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=480543 IAR44_RS08190 WP_060675464.1 1653388..1654287(+) (dprA) [Bacillus velezensis strain CLA178]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGAGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGAAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365