Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   NMBH4476_RS05510 Genome accession   NC_017516
Coordinates   1090564..1092309 (+) Length   581 a.a.
NCBI ID   WP_002225198.1    Uniprot ID   Q9JZ93
Organism   Neisseria meningitidis H44/76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1085564..1097309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS05485 (NMBH4476_0975) - 1085800..1087338 (+) 1539 WP_002225194.1 SurA N-terminal domain-containing protein -
  NMBH4476_RS05490 (NMBH4476_0976) recR 1087405..1088022 (+) 618 WP_002217147.1 recombination mediator RecR -
  NMBH4476_RS05495 (NMBH4476_0977) - 1088078..1088356 (-) 279 WP_002213502.1 hypothetical protein -
  NMBH4476_RS05500 (NMBH4476_0978) - 1088561..1089808 (+) 1248 WP_002225196.1 lipoprotein-releasing ABC transporter permease subunit -
  NMBH4476_RS05505 (NMBH4476_0979) lolD 1089801..1090496 (+) 696 WP_002225197.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMBH4476_RS05510 (NMBH4476_0980) recD 1090564..1092309 (+) 1746 WP_002225198.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMBH4476_RS05515 (NMBH4476_0981) - 1092337..1093440 (-) 1104 Protein_1008 methyltransferase -
  NMBH4476_RS12540 - 1093415..1093591 (-) 177 WP_153309848.1 nitric oxide synthase -
  NMBH4476_RS05520 (NMBH4476_0983) lon 1093691..1096153 (+) 2463 WP_002225200.1 endopeptidase La -
  NMBH4476_RS05525 (NMBH4476_0984) - 1096335..1096604 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  NMBH4476_RS05530 (NMBH4476_0985) - 1096663..1097097 (-) 435 WP_002217157.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62930.56 Da        Isoelectric Point: 5.8844

>NTDB_id=48054 NMBH4476_RS05510 WP_002225198.1 1090564..1092309(+) (recD) [Neisseria meningitidis H44/76]
MERQTDEFAQAAARAAIRFLEHYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCRHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=48054 NMBH4476_RS05510 WP_002225198.1 1090564..1092309(+) (recD) [Neisseria meningitidis H44/76]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACACTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTTGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACATCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCACAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCACCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCACACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCGGGCATT
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCATATTTTGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATACCGGGAAGTATGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.525

100

0.955

Multiple sequence alignment