Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IAR44_RS01810 Genome accession   NZ_CP061087
Coordinates   370594..371031 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain CLA178     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 365594..376031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR44_RS01785 (IAR44_01785) - 366614..367750 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  IAR44_RS01790 (IAR44_01790) - 367765..368199 (+) 435 WP_007409358.1 RDD family protein -
  IAR44_RS01795 (IAR44_01795) - 368271..368594 (+) 324 WP_060675310.1 YckD family protein -
  IAR44_RS01800 (IAR44_01800) - 368698..370134 (+) 1437 WP_060675311.1 glycoside hydrolase family 1 protein -
  IAR44_RS01805 (IAR44_01805) nin/comJ 370175..370573 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  IAR44_RS01810 (IAR44_01810) nucA/comI 370594..371031 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IAR44_RS01815 (IAR44_01815) hxlB 371389..371946 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  IAR44_RS01820 (IAR44_01820) hxlA 371943..372578 (-) 636 WP_031378686.1 3-hexulose-6-phosphate synthase -
  IAR44_RS01825 (IAR44_01825) - 372810..373172 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=480519 IAR44_RS01810 WP_003156588.1 370594..371031(-) (nucA/comI) [Bacillus velezensis strain CLA178]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=480519 IAR44_RS01810 WP_003156588.1 370594..371031(-) (nucA/comI) [Bacillus velezensis strain CLA178]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCCCTTAAACATGTGCCTGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641