Detailed information NTG0480486

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J5N95_RS18810
• Genome accession: NZ_CP072054
• Coordinates: 3916230..3917222 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain K1508
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3911230..3922222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5N95_RS18780 (J5N95_18780)	ispD	3911291..3912001 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J5N95_RS18785 (J5N95_18785)	ispF	3912001..3912480 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J5N95_RS18790 (J5N95_18790)	truD	3912477..3913526 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
J5N95_RS18795 (J5N95_18795)	surE	3913507..3914268 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J5N95_RS18800 (J5N95_18800)	pcm	3914262..3914888 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J5N95_RS18805 (J5N95_18805)	nlpD	3915073..3916167 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
J5N95_RS18810 (J5N95_18810)	rpoS	3916230..3917222 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
J5N95_RS18815 (J5N95_18815)	ygbN	3917316..3918680 (-)	1365	WP_000104441.1	GntP family transporter	-
J5N95_RS18820 (J5N95_18820)	ygbM	3918769..3919545 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
J5N95_RS18825 (J5N95_18825)	ygbL	3919550..3920188 (-)	639	WP_001278994.1	aldolase	-
J5N95_RS18830 (J5N95_18830)	otnK	3920280..3921446 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=480486 J5N95_RS18810 WP_000081588.1 3916230..3917222(+) (rpoS) [Escherichia coli strain K1508]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=480486 J5N95_RS18810 WP_000081588.1 3916230..3917222(+) (rpoS) [Escherichia coli strain K1508]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715