NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	HLB40_RS26235	Genome accession	NZ_CP061079
Coordinates	5926941..5928308 (-)	Length	455 a.a.
NCBI ID	WP_009050968.1	Uniprot ID	A0AB33WWE9
Organism	Pseudomonas chlororaphis strain qlu-1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5921941..5933308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HLB40_RS26210 (HLB40_26210)	-	5922779..5922976 (-)	198	WP_007930039.1	YbdD/YjiX family protein	-
HLB40_RS26215 (HLB40_26215)	-	5922992..5925058 (-)	2067	WP_009045728.1	carbon starvation CstA family protein	-
HLB40_RS26220 (HLB40_26220)	-	5925269..5925730 (+)	462	WP_009050965.1	methyltransferase family protein	-
HLB40_RS26225 (HLB40_26225)	-	5925789..5926157 (+)	369	WP_028683432.1	PilZ domain-containing protein	-
HLB40_RS26230 (HLB40_26230)	-	5926183..5926911 (-)	729	WP_101283635.1	hypothetical protein	-
HLB40_RS26235 (HLB40_26235)	radA	5926941..5928308 (-)	1368	WP_009050968.1	DNA repair protein RadA	Machinery gene
HLB40_RS26240 (HLB40_26240)	-	5928354..5928902 (-)	549	WP_101283637.1	ankyrin repeat domain-containing protein	-
HLB40_RS26245 (HLB40_26245)	katB	5929091..5930632 (-)	1542	WP_101283640.1	catalase KatB	-
HLB40_RS26250 (HLB40_26250)	mscL	5930919..5931332 (+)	414	WP_009045733.1	large-conductance mechanosensitive channel protein MscL	-
HLB40_RS26255 (HLB40_26255)	-	5931386..5932162 (-)	777	WP_038635265.1	ferredoxin--NADP reductase	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48840.31 Da Isoelectric Point: 7.1317

                                >NTDB_id=480436 HLB40_RS26235 WP_009050968.1 5926941..5928308(-) (radA) [Pseudomonas chlororaphis strain qlu-1]

MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA

TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=480436 HLB40_RS26235 WP_009050968.1 5926941..5928308(-) (radA) [Pseudomonas chlororaphis strain qlu-1]

ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG

CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGTGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG

GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATTCCACGCTTTTCCACGGCTTCCGGCGAACTG

GACCGGGTGCTCGGCGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT

TCTGTTACAGACCTTGTGCAACATCGCCACCCGCATGCCGGCGCTCTACGTCACAGGCGAAGAATCGCAGCAACAGGTGG

CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC

ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCCCC

CGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG

TGGGCCACGTGACCAAGGAGGGTGCGCTGGCCGGGCCGCGGGTCCTCGAGCATATGGTCGACACCGTGCTGTATTTCGAA

GGTGAGTCCGACGGTCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG

CATGACCGATCGCGGCTTGAAAGAGGTTTCCAACCCTTCAGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA

GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC

AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGTCACGGCGGCAT

TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA

TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC

GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGGGCCATCGTGCCCAA

GGGCAATGCCCCGAAAGAGCCGCCACAGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAGCAGGCGCTGGATGCGCTGT

TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.796	100	0.49
radA	Streptococcus mitis SK321	46.053	100	0.462
radA	Streptococcus mitis NCTC 12261	45.833	100	0.459
radA	Streptococcus pneumoniae Rx1	45.833	100	0.459
radA	Streptococcus pneumoniae D39	45.833	100	0.459
radA	Streptococcus pneumoniae R6	45.833	100	0.459
radA	Streptococcus pneumoniae TIGR4	45.833	100	0.459

Detailed information NTG0480436