Detailed information NTG0480404

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: J5D23_RS03330
• Genome accession: NZ_CP071987
• Coordinates: 719817..722642 (-)
• Length: 941 a.a.
• NCBI ID: WP_209614299.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5136
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 714817..727642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D23_RS03315 (J5D23_03315)	gyrA	715065..717551 (+)	2487	WP_209614296.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-
J5D23_RS03320 (J5D23_03320)	-	717551..718024 (+)	474	WP_209614297.1	hypothetical protein	-
J5D23_RS03325 (J5D23_03325)	flgR	718021..719166 (+)	1146	WP_209614298.1	sigma-54 dependent transcriptional regulator	-
J5D23_RS03330 (J5D23_03330)	uvrA	719817..722642 (-)	2826	WP_209614299.1	excinuclease ABC subunit UvrA	Machinery gene
J5D23_RS03335 (J5D23_03335)	hopE	722807..723628 (+)	822	WP_000395382.1	Hop family outer membrane protein HopE	-
J5D23_RS03340 (J5D23_03340)	rsmH	723803..724729 (+)	927	WP_209614300.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
J5D23_RS03345 (J5D23_03345)	-	724750..725094 (+)	345	WP_001953719.1	hypothetical protein	-
J5D23_RS03350 (J5D23_03350)	-	725590..726492 (+)	903	WP_209614301.1	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104736.64 Da
• Isoelectric Point: 8.1441

>NTDB_id=480404 J5D23_RS03330 WP_209614299.1 719817..722642(-) (uvrA) [Helicobacter pylori strain MT5136]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGEQFCPTCLEPISSMSASDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENASRIASAIEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCTYNGIDSTLCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCKGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAKPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVKDLLQNNHSTALYLNGTKKIERPKFEPPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKTQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAQNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=480404 J5D23_RS03330 WP_209614299.1 719817..722642(-) (uvrA) [Helicobacter pylori strain MT5136]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAACAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAATTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACCTTATACGCTG
AAGGGCAAAGGCGCTATTTAGAGAGTTTGTCTAGTTATGCGAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAGATTGAAGGGCTAACCCCAGCGATCGCCATTGATCAAAAGACCACCTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGGTTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCTATTA
GTTCTATGAGCGCGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTTTAGCCCCCATT
ATTAAAGATAAAAAAGGCTCGTTTAACGATAAATTAGAGAGCTTGCGTTTGAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG
TTATCAATAGCGAAAATGCTTCACGGATCGCTAGCGCAATAGAAAAAGCCCTTAAAGAAAGCTATGGGGAGTTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATAAGAAAGCATTACAGCGAGCATAAGGCATGTTTTAAGTGTAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCCTTCAATTCGCCTAAAGGGGCGTGCGAAAGTTGTTTGGGTTTGGGGACAAAAT
TTAGCCTAGATATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGAGCGATTAAAGTCATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCACTTATAATGGCATTGACAGCACGCTTTGTTTCAACGAGTTGAA
TAAAGAGCAACAAGACGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAACAGCCCTTTAAAACGCC
CCTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCATGCAAGGGGCATCGTTTGAAAGCCTCAAGTTTGAGCGTCCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAAGTCTATCATTTTTTTAATGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TCGCTAAACCGATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
AGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCTAGTCAAATCGGGAGCGGTTTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGCTTGCATGAAAAAGACACGCTCAAACTCATCAACACCCTTAGGAATTTAC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTCTTTAGCGGGAGCGTGAAAGATTTATTGCAAAATAACCATTCTACCGC
TTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCTAAATTTGAACCCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTGGTGTGCATTACGGGGGTGAGCGGG
AGCGGGAAAAGCTCGCTGATCTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAACTCAAAG
CTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTGGATCAAGCCCCCATAGGCAAAACCC
CACGAAGCAACCCTGCCACTTACACAGGGGTGATGGATGAAATCAGGATTTTATTTGCCGAACAGAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGCCGTTTTAGCTTTAATGTGAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGACATTAA
AATAGAAATGCATTTTTTGCCTGATGTGTTGGTCCAATGCGATAGCTGTAAGGGCGCTAAATACAACCCCCAAACTTTAG
AAATTAAGGTGAAAGGCAAATCCATTGCCGATGTGTTGAACATGAGCGTGGAAGAGGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCCGTGAAGTTAAAAACGCTTATAGATGTGGGCTTGGGCTATATCACTTTAGGGCAAAACGCTACGACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTGGCTAAAGAATTGAGTAAAAAAGACACAGGTAAAACCCTTTATATTTTAG
ATGAGCCCACCACCGGTTTGCATTTTGAAGACGTGAATCACCTTTTACAGGTTTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGCTGGTGATTGAGCATAATTTAGACATTATCAAAAACGCTGATTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGCGGGAGAGTCATTGCGAGCGGCACGCCTTTAGAGGTGGCACAAAATTGCGAAAAAACCCAAAGCTACACGGGAA
AATTTTTAGCTTTGGAATTGAAATAG

Domains

Predicted by InterProScan.

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

• ABC transporter (ABC_tran) (621-857)

• UvrA interaction domain (UvrA_inter) (137-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	50.157	100	0.51
uvrA	Streptococcus pneumoniae TIGR4	50.157	100	0.51
uvrA	Streptococcus pneumoniae D39	50.157	100	0.51