Detailed information NTG0480393

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: J5D23_RS01065
• Genome accession: NZ_CP071987
• Coordinates: 224007..225353 (+)
• Length: 448 a.a.
• NCBI ID: WP_209614076.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5136
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 219007..230353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D23_RS01035 (J5D23_01035)	-	219086..219940 (+)	855	WP_209614352.1	beta-1,4-N-acetylgalactosamyltransferase	-
J5D23_RS01040 (J5D23_01040)	-	220010..220636 (-)	627	WP_001933236.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
J5D23_RS01045 (J5D23_01045)	-	220702..221166 (+)	465	WP_021582253.1	helix-turn-helix domain-containing protein	-
J5D23_RS01050 (J5D23_01050)	-	221336..222499 (+)	1164	WP_209614074.1	NifS family cysteine desulfurase	-
J5D23_RS01055 (J5D23_01055)	-	222521..223501 (+)	981	WP_209614075.1	iron-sulfur cluster assembly scaffold protein	-
J5D23_RS01060 (J5D23_01060)	-	223660..223893 (+)	234	WP_000858673.1	ribbon-helix-helix domain-containing protein	-
J5D23_RS01065 (J5D23_01065)	radA	224007..225353 (+)	1347	WP_209614076.1	DNA repair protein RadA	Machinery gene
J5D23_RS01070 (J5D23_01070)	msrB	225475..226554 (+)	1080	WP_021187290.1	peptide-methionine (R)-S-oxide reductase MsrB	-
J5D23_RS01075 (J5D23_01075)	-	226937..227770 (-)	834	WP_000392977.1	sulfite exporter TauE/SafE family protein	-
J5D23_RS01080 (J5D23_01080)	hopM	227987..230068 (-)	2082	WP_209614077.1	SabA family sialic acid-binding adhesin	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49594.61 Da
• Isoelectric Point: 7.8131

>NTDB_id=480393 J5D23_RS01065 WP_209614076.1 224007..225353(+) (radA) [Helicobacter pylori strain MT5136]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLHALKKPLPQAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
MESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSTITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIIEWM

Nucleotide

• Length: 1347 bp

>NTDB_id=480393 J5D23_RS01065 WP_209614076.1 224007..225353(+) (radA) [Helicobacter pylori strain MT5136]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAATGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGCTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTACACGCGCTTAAAAAACCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAGCATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAATTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGCTGTATTTAGTTGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATGGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCCCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGGGTGCTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAAGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAAAT
GAAAGAGCAGGGTTTAGTGAGCGCTAAAGAGGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAGGGGAGCACGA
TTACCATTACTTTAGAAGGATCAAGAGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTCGGGGCGCCC
AAACGATTGGCGAACGGGTTTGATACTAACCGCCTTAACATGCTCATTGCTTTATTGGAAAAAAAGTTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAAATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGTGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGCCAAAAAACCTCTATCAAATGCTATGAGGCCAATGTGGTGGGTAAGATTATTGAGTGGATGTGA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (62-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	46.963	95.536	0.449
radA	Streptococcus pneumoniae Rx1	46.963	95.536	0.449
radA	Streptococcus pneumoniae D39	46.963	95.536	0.449
radA	Streptococcus pneumoniae TIGR4	46.963	95.536	0.449
radA	Streptococcus mitis SK321	46.963	95.536	0.449
radA	Streptococcus mitis NCTC 12261	46.729	95.536	0.446
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.838	95.313	0.446