Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   J5D25_RS05800 Genome accession   NZ_CP071986
Coordinates   1249652..1250701 (+) Length   349 a.a.
NCBI ID   WP_209553683.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5124     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244652..1255701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D25_RS05785 (J5D25_05785) - 1245561..1246823 (-) 1263 WP_209553680.1 DUF874 family protein -
  J5D25_RS05790 (J5D25_05790) asd 1247235..1248275 (-) 1041 WP_209553681.1 aspartate-semialdehyde dehydrogenase -
  J5D25_RS05795 (J5D25_05795) hisS 1248262..1249590 (-) 1329 WP_209553682.1 histidine--tRNA ligase -
  J5D25_RS05800 (J5D25_05800) waaF 1249652..1250701 (+) 1050 WP_209553683.1 lipopolysaccharide heptosyltransferase II Regulator
  J5D25_RS05805 (J5D25_05805) - 1250890..1251162 (-) 273 WP_000744165.1 hypothetical protein -
  J5D25_RS05810 (J5D25_05810) fusA 1251717..1253795 (-) 2079 WP_000101878.1 elongation factor G -
  J5D25_RS05815 (J5D25_05815) rpsG 1253807..1254274 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  J5D25_RS05820 (J5D25_05820) rpsL 1254290..1254697 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39495.16 Da        Isoelectric Point: 9.5387

>NTDB_id=480375 J5D25_RS05800 WP_209553683.1 1249652..1250701(+) (waaF) [Helicobacter pylori strain MT5124]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFVLVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEAAAVLLEKGHEIYFFGAKEDTIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=480375 J5D25_RS05800 WP_209553683.1 1249652..1250701(+) (waaF) [Helicobacter pylori strain MT5124]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTGTCTTAGTGGGACCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCGAAAAGATGGCCAGCTTCTTATTACGCTGAAGCCGCCGCTGTTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACACTATCGTTTCTGAAGAAATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTAAACCACCATTTAAGCTGTGCACCTTGTAAAAAGCGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCACACCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.209

98.567

0.367