Detailed information NTG0480372

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: J5D25_RS04370
• Genome accession: NZ_CP071986
• Coordinates: 916352..919177 (+)
• Length: 941 a.a.
• NCBI ID: WP_209553525.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5124
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 911352..924177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D25_RS04350 (J5D25_04350)	-	912545..913447 (-)	903	WP_156534852.1	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-
J5D25_RS08060	-	913586..913769 (-)	184	Protein_854	hypothetical protein	-
J5D25_RS04355 (J5D25_04355)	-	913898..914242 (-)	345	WP_156534850.1	hypothetical protein	-
J5D25_RS04360 (J5D25_04360)	rsmH	914263..915189 (-)	927	WP_209553524.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
J5D25_RS04365 (J5D25_04365)	hopE	915366..916187 (-)	822	WP_153227329.1	Hop family outer membrane protein HopE	-
J5D25_RS04370 (J5D25_04370)	uvrA	916352..919177 (+)	2826	WP_209553525.1	excinuclease ABC subunit UvrA	Machinery gene
J5D25_RS04375 (J5D25_04375)	flgR	919855..921000 (-)	1146	WP_209553526.1	sigma-54 dependent transcriptional regulator	-
J5D25_RS04380 (J5D25_04380)	-	920997..921470 (-)	474	WP_209553527.1	hypothetical protein	-
J5D25_RS04385 (J5D25_04385)	gyrA	921470..923956 (-)	2487	WP_209553528.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104765.59 Da
• Isoelectric Point: 7.7365

>NTDB_id=480372 J5D25_RS04370 WP_209553525.1 916352..919177(+) (uvrA) [Helicobacter pylori strain MT5124]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGEQFCPTCLEPISSMSASDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENASRIASAVEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCEYNGIDSVLCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCNGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVKELLQNNHSTALYLNGTKKIERPKFELPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKTQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMLVIEHNLDIIKNADYIIDMGPDGGDKGGRVIASGTPLEVAQNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=480372 J5D25_RS04370 WP_209553525.1 916352..919177(+) (uvrA) [Helicobacter pylori strain MT5124]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAACAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAATTTGTTGTTTTTACCGGATTGAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTTTATACGCTG
AAGGCCAAAGACGCTATTTAGAGAGTTTGTCCAGCTATGCTAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAGATTGAAGGCCTAACCCCTGCGATTGCTATTGATCAAAAAACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGGTTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCCATTA
GTTCTATGAGCGCGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTAGCCCCCATT
ATTAAAGATAAAAAAGGTTCGTTTAACGATAAATTAGAGAGCTTGCGTTTAAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGAGTGG
TTATTAATAGCGAAAACGCTTCACGGATCGCTAGCGCGGTAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATTAGGAAGCATTACAGCGAGCATAAGGCATGCTTTAAATGCAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCATTCAATTCGCCTAAAGGGGCGTGCGAGAGCTGTTTGGGTTTAGGGACAAAAT
TCAGTTTAGACATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGAGCGATTAAAGTCATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCGAGTATAATGGTATTGACAGCGTGCTTTGTTTTAATGAATTGAA
CAAAGAGCAGCAAGACGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAACAGCCCCTTGAAACGCC
CCTGGAAAGGTATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCGTGTAATGGGCATCGTTTGAAAGCTTCAAGTTTGAGCGTCCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAAGTCTATCACTTTTTTAATGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TCGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
AGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCTAGTCAAATCGGGAGCGGTTTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGCTTGCATGAAAAAGACACGCTCAAACTCATCAACACCCTTAGGAATTTAC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTGAAAGAATTATTGCAAAATAACCATTCTACCGC
CTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCCAAATTTGAACTCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTGGTGTGCATTACGGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATCTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAACTCAAAG
TTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTGGATCAAGCCCCCATAGGCAAAACCC
CACGAAGCAACCCTGCCACTTACACGGGGGTGATGGATGAAATCAGGATTTTATTTGCCGAGCAGAAAGAAGCTAAAATT
TTAGGCTATAGTGCGAGCCGTTTTAGCTTTAATGTGAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCATTTTTTGCCTGATGTGTTGGTCCAATGCGATAGCTGTAAGGGCGCTAAATACAACCCCCAGACTTTAG
AAATCAAGGTGAAAGGCAAATCCATTGCTGATGTGTTGAACATGAGCGTGGAAGAGGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCCGTGAAGTTAAAAACGCTTATAGATGTGGGCTTGGGCTATATCACTTTAGGGCAAAACGCTACCACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTGGCTAAAGAATTGAGTAAAAAAGACACAGGCAAAACCCTTTATATTTTAG
ATGAGCCTACTACCGGTTTGCATTTTGAAGACGTGAATCACCTTTTACAAGTTTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGCTAGTGATTGAGCATAATTTAGACATTATCAAAAACGCTGATTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGCGGGAGAGTCATTGCGAGCGGCACGCCTTTAGAGGTGGCGCAAAATTGCGAAAAAACCCAAAGCTATACGGGAA
AATTTTTAGCTTTGGAATTGAAATAG

Domains

Predicted by InterProScan.

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

• ABC transporter (ABC_tran) (621-857)

• UvrA interaction domain (UvrA_inter) (137-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	50.052	100	0.509
uvrA	Streptococcus pneumoniae TIGR4	50.052	100	0.509
uvrA	Streptococcus pneumoniae D39	50.052	100	0.509